PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.313310.1
Common NameCsa_3G902960, LOC101221483
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LSD
Protein Properties Length: 145aa    MW: 15018.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.313310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132953125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  Cucsa.313310.1 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                    ************************9 PP
2zf-LSD146.84.8e-156892125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  Cucsa.313310.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                    ************************9 PP
3zf-LSD141.91.7e-13106130125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  Cucsa.313310.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.6E-420127No hitNo description
TIGRFAMsTIGR010539.7E-132656IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.84E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.6E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-11103133IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPPVPLAPYP TPPAPYTQPS NATQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVSCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGMSTSAI DQKA*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818246e-52LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132586e-52LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148490.11e-99PREDICTED: protein LOL1
RefseqXP_011652655.11e-99PREDICTED: protein LOL1
RefseqXP_011652656.11e-99PREDICTED: protein LOL1
RefseqXP_011652657.11e-99PREDICTED: protein LOL1
SwissprotQ93ZB18e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A0A0LEE43e-98A0A0A0LEE4_CUCSA; Uncharacterized protein
STRINGXP_004168567.15e-99(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-66lsd one like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]