PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.312880.1
Common NameCsa_3G901030, LOC101212772
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 813aa    MW: 90354.5 Da    PI: 5.8605
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.312880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-2096151156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Cucsa.312880.1  96 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 151
                     688899***********************************************998 PP
2START163.12.1e-512985233206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     a +  +elvk+  ++ep+Wv++   e g+evl  +e ++               +++ea r+s+vv+m++ +lv  +ld + +W e ++    ka
  Cucsa.312880.1 298 AVSSIAELVKMCRLTEPLWVRDN--ESGKEVLNVEEHGRMfpwplnlkqhlineFRTEATRDSAVVIMNSITLVDAFLDAN-KWMELFPsivaKA 389
                     677889***************99..**********99999*****************************************.******99999** PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     +t++viss       + lqlm+aelq lsplvp R+  f+R+++q   +g+w++vd  +ds  +   ++s+ R ++ pSg++i++++ng+s+vtw
  Cucsa.312880.1 390 KTVQVISSSvsghasSSLQLMYAELQTLSPLVPtREAHFLRCCQQnADEGSWTVVDFPIDSFHDSL-QHSFPRYRRKPSGCIIQDMPNGYSRVTW 483
                     *********************************************9999*************9987.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh++ +++ +h++++++v+sg+a+ga++w+a lqrqce+
  Cucsa.312880.1 484 VEHAEIEEKPIHQIFNHFVHSGMAFGANRWLAILQRQCER 523
                     **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-1984154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2091158IPR009057Homeodomain-like
PROSITE profilePS5007117.39493153IPR001356Homeobox domain
SMARTSM003896.0E-1994157IPR001356Homeobox domain
PfamPF000468.7E-1896151IPR001356Homeobox domain
CDDcd000863.53E-1896154No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084844.794287526IPR002913START domain
SuperFamilySSF559612.86E-31289525No hitNo description
CDDcd088752.47E-111291522No hitNo description
SMARTSM002343.8E-37296523IPR002913START domain
PfamPF018523.6E-44298523IPR002913START domain
Gene3DG3DSA:3.30.530.207.4E-7379507IPR023393START-like domain
SuperFamilySSF559612.86E-16560778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MYGDCQVMSS NMGGNMVSTE SLFSSPIQNP NFNFISNFQH FPSIVPKEEN GLMMRGGKED  60
MESGSGSEQL VEENQGIEME SNINNNDSIT QQNQKKKRYH RHTARQIQEM EALFKECPHP  120
DDKQRLKLSQ ELGLKPRQVK FWFQNRRTQM KAQQDRSDNV ILRAENETLK NENYRLQSAL  180
RNIICPSCGG QGILGEPSLD EQQLRLENAR LRDQLEQVCS MTTRYTGRPI QAMASAAPPL  240
MQPSLDLDMN IYSRQYTEAM VPSSDMMALP SMLPPEAAHF PEGGLLIEEE KTLAMDLAVS  300
SIAELVKMCR LTEPLWVRDN ESGKEVLNVE EHGRMFPWPL NLKQHLINEF RTEATRDSAV  360
VIMNSITLVD AFLDANKWME LFPSIVAKAK TVQVISSSVS GHASSSLQLM YAELQTLSPL  420
VPTREAHFLR CCQQNADEGS WTVVDFPIDS FHDSLQHSFP RYRRKPSGCI IQDMPNGYSR  480
VTWVEHAEIE EKPIHQIFNH FVHSGMAFGA NRWLAILQRQ CERIASLMAR NISDLGVIPS  540
PEARQNLMKL AQRMIRTFSV NISTSGGQSW TALSDSPEDT VRITTRKVVE PGQPNGVILS  600
AVSTTWLPYP HYRVFDLLRD ERRRSQLEVL SNGNSLHEVA HIANGSHPGN CISLLRINVA  660
SNSSQHVELM LQESCTDQSG SLVVYATIDV DSIQLAMSGE DPSCIPLLPI GFSIVPIIGS  720
TIDGHPAPPP EDGTPNPNSG CLLTVGLQVL ASTIPSAKLN LSSVTAINNH LCNTVHQINI  780
ALGGPGRLEN DNVVAEPNNP PTPPPPPPPS KQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652639.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0A0LEZ70.0A0A0A0LEZ7_CUCSA; Uncharacterized protein
STRINGXP_004172445.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]