PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.312190.1 | ||||||||
Common Name | Csa_3G893390, LOC101222621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 36464.5 Da PI: 4.6521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4e-12 | 160 | 203 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L Cucsa.312190.1 160 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYVKEL 203 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.11 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 158 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 160 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-12 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 161 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.20E-5 | 161 | 208 | No hit | No description |
CDD | cd04873 | 1.37E-5 | 251 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MELNEHYLLE EVLGLRRSEV MNWELAIATE MNGWNFDCSD SLPMDQQHND LAYLLNGEDQ 60 YLGTEAAMAA AGSTGDSMSY STMAETPGGS SFEVYNIRSM EEEELGILED EIHNLEVQAN 120 NDSYYCKVEP VVVDQSPAKM LPIFKTGGSK KLQGQPSKNL MAERRRRKRL NDRLSMLRSI 180 VPKISKMDRT AILADAIEYV KELMERIQIL EKEISNSNKL GILRSHIVKP NNEYLVRNSA 240 KFNVERREEE TKIEICCAAK PGLLLSTVNT LEAMGLDIQH CVISCFNDFA IQASCSPGNE 300 VGRMVSTEEV KQALFENAGY GGKCL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 162 | 169 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 1e-140 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 1e-140 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136242.1 | 0.0 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 1e-71 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0A0LGY7 | 0.0 | A0A0A0LGY7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136242.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 7e-74 | beta HLH protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.312190.1 |
Entrez Gene | 101222621 |