PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.311190.2

Common Name

Csa_3G882960, LOC101210084

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 290aa MW: 32579.8 Da PI: 4.794

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.311190.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.5e-09	29	105	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt l+L+++ +e + ++ + ++W+ v++++ + + r+++qC+ kw+ l ++ ik++e k +++ s + Cucsa.311190.2 29 WTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKM-PDDDSYW 105 ************************************************************9999999986.4444455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.69	29	85	IPR017877	Myb-like domain
Pfam	PF13837	1.4E-6	29	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MKKENAGNRG SGVSGSRRTR SQIAVAPGWT AADCLVLVNV IAAVEADCLK ALSSYQKWKI 60 VAENCTSLDV VRTSNQCRRK WDCLLIEHDV IKQWELKMPD DDSYWCLASG RRKELGLPEN 120 FDEELFKAAI GNADEIAEPG PKRQRRRSMS KSNQVLEKSL ECERNLGLEI SLECKEVEDR 180 GERGGEEVEE KPLLSSPELE PRECYIKSNE SKVTDNIEPK EQMMAKFLLE NAEKVQAIVS 240 ENAEYTTSDE KCAKDQTNLV RHQGSKLIRC LGDILNTIND LRGLLEDCE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136441.1	0.0	PREDICTED: uncharacterized protein LOC101210084
Refseq	XP_011652540.1	0.0	PREDICTED: uncharacterized protein LOC101210084
TrEMBL	A0A0A0LDW0	0.0	A0A0A0LDW0_CUCSA; Uncharacterized protein
STRING	XP_004164105.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	5e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.311190.2
Entrez Gene	101210084

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]