PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.311190.1 | ||||||||
Common Name | Csa_3G882960, LOC101210084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 312aa MW: 34924.2 Da PI: 4.5864 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.9 | 2.9e-09 | 29 | 105 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt l+L+++ +e + ++ + ++W+ v++++ + + r+++qC+ kw+ l ++ ik++e k +++ s + Cucsa.311190.1 29 WTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKM-PDDDSYW 105 ************************************************************9999999986.4444455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-6 | 29 | 100 | No hit | No description |
PROSITE profile | PS50090 | 6.69 | 29 | 85 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKKENAGNRG SGVSGSRRTR SQIAVAPGWT AADCLVLVNV IAAVEADCLK ALSSYQKWKI 60 VAENCTSLDV VRTSNQCRRK WDCLLIEHDV IKQWELKMPD DDSYWCLASG RRKELGLPEN 120 FDEELFKAID NVASMRANQS DTEPDSDPEA AIGNADEIAE PGPKRQRRRS MSKSNQVLEK 180 SLECERNLGL EISLECKEVE DRGERGGEEV EEKPLLSSPE LEPRECYIKS NESKVTDNIE 240 PKEQMMAKFL LENAEKVQAI VSENAEYTTS DEKCAKDQTN LVRHQGSKLI RCLGDILNTI 300 NDLRGLLEDC E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136441.1 | 0.0 | PREDICTED: uncharacterized protein LOC101210084 | ||||
Refseq | XP_011652540.1 | 0.0 | PREDICTED: uncharacterized protein LOC101210084 | ||||
TrEMBL | A0A0A0LDW0 | 0.0 | A0A0A0LDW0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004164105.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6732 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 9e-51 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.311190.1 |
Entrez Gene | 101210084 |
Publications ? help Back to Top | |||
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