PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.310360.2
Common NameCsa_3G878210, LOC101206916
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 169aa    MW: 18486.5 Da    PI: 4.8962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.310360.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-092292855
             AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++r++lg+f+tae+Aa+a+++a+  ++g
  Cucsa.310360.2  2 KRRVWLGTFDTAEDAARAYDQAAILMNG 29
                    59*********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.749137IPR001471AP2/ERF domain
CDDcd000188.27E-19239No hitNo description
Gene3DG3DSA:3.30.730.104.7E-18239IPR001471AP2/ERF domain
SMARTSM003808.9E-12243IPR001471AP2/ERF domain
PfamPF008478.8E-6229IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-11239IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRRVWLGTF DTAEDAARAY DQAAILMNGQ NAKTNFPASK DHSEEASHGH GSSPMSPKAL  60
SELLSTKLRK CCKNPSPSLT CLRLDCDNAH IGVWQKRAGT RATSNWVMRI ELGKKEVPSP  120
ESTSQEADGD GDGDGDDHQN EIDEEDRIAM QMIEELLNWN CPLPSTSS*
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136348.11e-123PREDICTED: ethylene-responsive transcription factor SHINE 2
RefseqXP_011652482.11e-123PREDICTED: ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9588e-59SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0A0LJA81e-121A0A0A0LJA8_CUCSA; Uncharacterized protein
STRINGXP_004136348.11e-122(Cucumis sativus)
STRINGXP_004162048.11e-122(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.27e-49ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  5. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]