PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.309470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | VOZ | ||||||||
Protein Properties | Length: 466aa MW: 52201.1 Da PI: 5.8587 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 431.5 | 1.2e-132 | 229 | 445 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 p+psaf+gp calwdc+rpaqgs+w+qdycss+h++la+neglpg+ p+lrp+gi++kdg+lfaal+ak+q+kevgip c+gaat+kspwna+el Cucsa.309470.1 229 PRPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPEL 323 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fd+++legetirewl+fdkprrafesgnrkqrslpdysgrgwhesrk vmkefgg+k+syymdpqpss++ewhlyey+i+++d++alyrlelk++ Cucsa.309470.1 324 FDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSTLEWHLYEYDITNYDSFALYRLELKHA 418 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kks+kgk+++d+ladlqkk+grlta Cucsa.309470.1 419 DTKKSPKGKLAADPLADLQKKMGRLTA 445 *************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MPKGLKSKCQ STSHQLLKEK AKNRVNDLQG IFTNLQNARK ESRTTDVAVL EEQVHQMLRE 60 WNAELNEPSP ASSLVEGSLG SFSQELARLL EHCDEQDDAT STLAEPKAEP ELHCILGSNP 120 SNFVQDGFCI PELQHESFFG FEECKVSPLD IQNYSFYKSD MATQSNCQSF KLDQNLEQTT 180 MVSKDDMSTL NCHILNSQPE FDYGVLIGAS DVGDFIQDTK PSILPNIAPR PSAFMGPICA 240 LWDCFRPAQG SKWCQDYCSS CHSVLAINEG LPGMIPILRP GGIGFKDGPL FAALQAKTQA 300 KEVGIPICDG AATRKSPWNA PELFDITFLE GETIREWLYF DKPRRAFESG NRKQRSLPDY 360 SGRGWHESRK LVMKEFGGQK KSYYMDPQPS STLEWHLYEY DITNYDSFAL YRLELKHADT 420 KKSPKGKLAA DPLADLQKKM GRLTAEGPVE LGQQVKGKMT MKRNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 0.0 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649982.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_011649983.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-167 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1S3C2S3 | 0.0 | A0A1S3C2S3_CUCME; transcription factor VOZ1-like | ||||
STRING | XP_004158584.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-170 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.309470.1 |
Publications ? help Back to Top | |||
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