PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308740.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 357aa    MW: 39770 Da    PI: 7.166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047239261123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cg  F++   L  H+r+H
  Cucsa.308740.1 239 HECAICGAEFTSGQALGGHMRRH 261
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-12163188IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076164191IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7164186No hitNo description
SMARTSM003550.8164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7234261No hitNo description
PfamPF139126.8E-12238263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515239261IPR007087Zinc finger, C2H2
SMARTSM003550.056239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEVVDHQENS DMGSKEQQQA ALIAKGKRTK RQRLHSPIPF AVPTNSSSGD LGGVVVVVAD  60
HDDHHSDFVP QNNDHYQSNT NFSPSSSSAH DDQLVQQFNN NTSTTTEEEE DMANCLILLA  120
QGRPPCSPLT KQLDTGPFHH VTNNVRRFSA ENVEKGGGVG CYAYECKTCY RTFPSFQALG  180
GHRASHKKPK AMEAEKKHIL SSDDEEIQFK NNNITTTHSL SLQLNQRGSL NSSGKAKVHE  240
CAICGAEFTS GQALGGHMRR HRAMPVGTNT ALSLTPMNME TEDQRQPKRQ RSVLSLDLDL  300
NLPAPQEHDQ RSESKFLMKS NQQQQQQQPQ QQHNKQQQQQ QQPLVFPART LVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142506.20.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0A0KRI90.0A0A0A0KRI9_CUCSA; Uncharacterized protein
STRINGXP_004142506.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-56C2H2 family protein