PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.308240.1

Common Name

Csa_5G623500, LOC101222167

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1651aa MW: 179574 Da PI: 6.2924

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.308240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	987	1028	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE + + +av +G++ ++ I+r++ +++ qck ++ Cucsa.308240.1 987 SNWTDEEKLVFMQAVSSYGKD-FDMISRCIR-SKSRDQCKIFFS 1028 58***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-12	757	819	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.656	769	820	IPR017884	SANT domain
SMART	SM00717	3.1E-5	770	818	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-5	981	1029	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-10	983	1035	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.622	984	1035	IPR017884	SANT domain
SMART	SM00717	2.9E-6	985	1033	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-6	988	1027	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-5	988	1027	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1651 aa Download sequence Send to blast
MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADLR RPTGHGKQGG 60 WHQFSEDSSH GYGPSRSFSD RVIEDESFRP SVPRGDGKYI RIGRESRGSF SHRDWRSHSR 120 DANNGFGNPS RRTSSQDVSS DQRSVDDTVT YSSPQSFHGL ENGPRSDVEV SLGSTDWKPL 180 KWSRSGSLSS RGSAYSSSTN SKNEKADLPL RVASPIESPS AEATACVTSS LPSEDAISRK 240 KPRLGWGDGL AKYEKEKVEV PDGSLRKEVA LLSSGSGELT HSLGSNFAEK SPKTLPFSDC 300 ASPATPSSFA CSSSSGLEDK PFSKGAGADG MICSSPGSGS QNLQKLLCSI EKMEISSVAN 360 LGSSLVELFH SDDPNTIESC FGKSTLNKLL AYKGEISKTL EMTESEIDSL ENELKSLKSV 420 NGGNVSHKKS CSATRVMESS TYFKEQDGIS CIATRPAPLV VVSSSDATVE KVPLCKGDVG 480 VEDVDTKADE IDSPGTVTSK FNEPSRVVKA IASDIVDNGH CSVVTDAIVP GKMEGSFPIS 540 GPFVDEHETI GSGNECTLAK SCTSESVYGD LMAQAGSRSS LCDSIFACNK EYASRAAEVI 600 FKRSPVGMCK ISSKSTKNVS CSETEKLIKE KFVMRKKFLK FKESALTLRF KSLQQSWKEG 660 LLHSVKKCRS RPQKKELSLR VTHSGHQKYR SSSIRSRLVQ QGACQSSTFN TEIAVRHSSK 720 LLLNPQIKLY RNTLKMPAMI LDKKEKIALR FISHNGLVED PCAVEKERNL INPWTSAEKE 780 IFWEKLSLFG KDFKKISSFL DLKTTADCIQ FYYKNHKSDS FKKNKNLELG KQMKSSAITY 840 LVTSGKKWNP DANATSLDIL GVASVMAAQA DYDIENQQKC TRHLGVGRDV ESKVSWSASS 900 PNKSNLDDLQ TEKETVAADV LAGISGSISS EALSSCITSA IDPREELRER KCYKVDFAAK 960 LPSLSDVMQK TDNEPCSDDS SEDVDSSNWT DEEKLVFMQA VSSYGKDFDM ISRCIRSKSR 1020 DQCKIFFSKA RKCLGLDLMH TSGDVGETPG NGNDASGSGS GTDTEEHCVV EICEGRGSDE 1080 FISKSINGGS TSVNINHEET VSAVTDNMRT SMEFEESTAL QQSDEKGAEA VGNLIFETLK 1140 EEDVPNPSQP THDHKIEGSS ENTESGKSCN EPDILRSESV STVDENSAAV SEGRATVKLA 1200 IGEEEVGSDT NLHGQSTILC SGQDSTGNDS NIALEGSSVG LDPHILHPNI LKVEPVEKKS 1260 CIKSEENFLS VRNSDTGVIG REQMLNQDIS SSTLILQEIS DANQKPMNRD DDAEHPNNLL 1320 CNSESSTFPR SYPFNKQIFE DINRNINHAY FRVQGLSKPD INCNSKYVSE GQFLQNCNSS 1380 KPHNLAEPPF LSQNIELGHD HQKNASGSGS ASDSDVPCRK GDVKLFGQIL SHAPSQQNSS 1440 SGSNECGEKK GPLHNSSSKS CDMGENIPLR SYGFWDGSRI QTGLSALPDS AILQAKYPAA 1500 FSGYSATSVK TEQQPLQALS NNGDQSLNEL VSAFPTKDGV VDYHSHRSRD GVKMRPFPVD 1560 IFSEMHRRNG FDAVSLSSLQ QQGRVLVGMN VVGRGGILMG GSCTGVSDPV AAIKMHYAKA 1620 DQYAGQPASM FTREDGSWRG GGNGGDLGSR *

Sequence ? help Back to Top

Protein Sequence Length: 1651 aa Download sequence Send to blast

MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADLR RPTGHGKQGG  60
WHQFSEDSSH GYGPSRSFSD RVIEDESFRP SVPRGDGKYI RIGRESRGSF SHRDWRSHSR  120
DANNGFGNPS RRTSSQDVSS DQRSVDDTVT YSSPQSFHGL ENGPRSDVEV SLGSTDWKPL  180
KWSRSGSLSS RGSAYSSSTN SKNEKADLPL RVASPIESPS AEATACVTSS LPSEDAISRK  240
KPRLGWGDGL AKYEKEKVEV PDGSLRKEVA LLSSGSGELT HSLGSNFAEK SPKTLPFSDC  300
ASPATPSSFA CSSSSGLEDK PFSKGAGADG MICSSPGSGS QNLQKLLCSI EKMEISSVAN  360
LGSSLVELFH SDDPNTIESC FGKSTLNKLL AYKGEISKTL EMTESEIDSL ENELKSLKSV  420
NGGNVSHKKS CSATRVMESS TYFKEQDGIS CIATRPAPLV VVSSSDATVE KVPLCKGDVG  480
VEDVDTKADE IDSPGTVTSK FNEPSRVVKA IASDIVDNGH CSVVTDAIVP GKMEGSFPIS  540
GPFVDEHETI GSGNECTLAK SCTSESVYGD LMAQAGSRSS LCDSIFACNK EYASRAAEVI  600
FKRSPVGMCK ISSKSTKNVS CSETEKLIKE KFVMRKKFLK FKESALTLRF KSLQQSWKEG  660
LLHSVKKCRS RPQKKELSLR VTHSGHQKYR SSSIRSRLVQ QGACQSSTFN TEIAVRHSSK  720
LLLNPQIKLY RNTLKMPAMI LDKKEKIALR FISHNGLVED PCAVEKERNL INPWTSAEKE  780
IFWEKLSLFG KDFKKISSFL DLKTTADCIQ FYYKNHKSDS FKKNKNLELG KQMKSSAITY  840
LVTSGKKWNP DANATSLDIL GVASVMAAQA DYDIENQQKC TRHLGVGRDV ESKVSWSASS  900
PNKSNLDDLQ TEKETVAADV LAGISGSISS EALSSCITSA IDPREELRER KCYKVDFAAK  960
LPSLSDVMQK TDNEPCSDDS SEDVDSSNWT DEEKLVFMQA VSSYGKDFDM ISRCIRSKSR  1020
DQCKIFFSKA RKCLGLDLMH TSGDVGETPG NGNDASGSGS GTDTEEHCVV EICEGRGSDE  1080
FISKSINGGS TSVNINHEET VSAVTDNMRT SMEFEESTAL QQSDEKGAEA VGNLIFETLK  1140
EEDVPNPSQP THDHKIEGSS ENTESGKSCN EPDILRSESV STVDENSAAV SEGRATVKLA  1200
IGEEEVGSDT NLHGQSTILC SGQDSTGNDS NIALEGSSVG LDPHILHPNI LKVEPVEKKS  1260
CIKSEENFLS VRNSDTGVIG REQMLNQDIS SSTLILQEIS DANQKPMNRD DDAEHPNNLL  1320
CNSESSTFPR SYPFNKQIFE DINRNINHAY FRVQGLSKPD INCNSKYVSE GQFLQNCNSS  1380
KPHNLAEPPF LSQNIELGHD HQKNASGSGS ASDSDVPCRK GDVKLFGQIL SHAPSQQNSS  1440
SGSNECGEKK GPLHNSSSKS CDMGENIPLR SYGFWDGSRI QTGLSALPDS AILQAKYPAA  1500
FSGYSATSVK TEQQPLQALS NNGDQSLNEL VSAFPTKDGV VDYHSHRSRD GVKMRPFPVD  1560
IFSEMHRRNG FDAVSLSSLQ QQGRVLVGMN VVGRGGILMG GSCTGVSDPV AAIKMHYAKA  1620
DQYAGQPASM FTREDGSWRG GGNGGDLGSR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-16	731	822	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-16	731	822	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142488.1	0.0	PREDICTED: uncharacterized protein LOC101222167
TrEMBL	A0A0A0KWU7	0.0	A0A0A0KWU7_CUCSA; Uncharacterized protein
STRING	XP_004142488.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-102	MYB family protein

Link Out ? help Back to Top
Phytozome	Cucsa.308240.1
Entrez Gene	101222167

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]