PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308180.1
Common NameCsa_5G623560, LOC101203396
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 470aa    MW: 52677.5 Da    PI: 5.2575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.81.8e-137484621373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++s+++l +al++++    ++ ee+ a++lf+e++P+lk+++
  Cucsa.308180.1  48 LIHLLLGCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHRALNSTKIL--SVPEEILAQRLFFELCPFLKLAY 140
                     689*************************************************************988887..59********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+++HiiDf   +++QW++Llq+L +Rp+gpp+lRiTg+++    +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+
  Cucsa.308180.1 141 VMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHE----QKEVLEQMALRLTEEAEKWDIPFQFTP-VVSKLENLD 230
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.....................................................desvsleserdevLklvk 232
                     le+Lrvk+gEalaV++vl+lh++l                                                     + s+    + +++L +++
  Cucsa.308180.1 231 LESLRVKTGEALAVSSVLELHSVLatdddkktsppasknlqkllrmkqrtlgewletdslqvfsspdsasvsspsglNPSQ----KMNSFLTALW 321
                     *******************************************************************99998644433333....5667****** PP

            GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                     +lsPkv+v++eqe+++n++ F+er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++acegaer+erhe+lekW  rle++GF++v
  Cucsa.308180.1 322 GLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWMLRLESVGFGKV 416
                     *********************************************************************************************** PP

            GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     pls++ +   ++ll+ ++ dgy+++ee+g l+++W+drpL+svSaW
  Cucsa.308180.1 417 PLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAW 462
                     ********************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.90622443IPR005202Transcription factor GRAS
PfamPF035146.2E-13548462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAGMFNGEGS SSVTSSPLQF FPWSLSPGIG SPYPFLRELK SEERGLCLIH LLLGCANQVA  60
IGNIENANVG LEQISHLASP DGDTMQRIAA YFTEALADRI LKSWPGLHRA LNSTKILSVP  120
EEILAQRLFF ELCPFLKLAY VMTNQAIIEA MEGERMIHII DFKSCEPAQW INLLQTLKDR  180
PDGPPHLRIT GIHEQKEVLE QMALRLTEEA EKWDIPFQFT PVVSKLENLD LESLRVKTGE  240
ALAVSSVLEL HSVLATDDDK KTSPPASKNL QKLLRMKQRT LGEWLETDSL QVFSSPDSAS  300
VSSPSGLNPS QKMNSFLTAL WGLSPKVMVI TEQESNLNGS AFMERVLEAL NFYAALFDCL  360
ESTVSRSSIE RQRVEKMLLG EEIKNIIACE GAERTERHEK LEKWMLRLES VGFGKVPLSY  420
HSMLLGSRLL QSYGYDGYKI KEENGFLFIC WQDRPLFSVS AWGFQRQSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-65364627378Protein SCARECROW
5b3h_A1e-65324622377Protein SCARECROW
5b3h_D1e-65324622377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655897.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0A0KV190.0A0A0A0KV19_CUCSA; Uncharacterized protein
STRINGXP_004166266.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  5. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  6. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]