PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.307820.1 | ||||||||
Common Name | Csa_5G624430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 37212 Da PI: 9.349 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 7e-10 | 44 | 86 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cucsa.307820.1 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86 568899************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-8 | 35 | 89 | No hit | No description |
SMART | SM00338 | 9.8E-8 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.1E-7 | 42 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.38E-7 | 46 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.6E-33 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MTDVSPRTDI STDVDTDDKH QRLDMLQRNA VASDSSDRTK DKSDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQAHSMAGNG AMAFDVEYAR 120 WLEEQNKQIN ELRAAVNSHA SDTELRMIVD GILAHYDEVF RLKGVAAKAD VFHLLSGMWK 180 TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQLMGISNL QQSSQQTEDA LSQGMEALQQ 240 SLAETLSSGS LGSSNTSGNV ANYMGQMATA MGKLGTLEGF IRQADNLRQQ TLQQMHRILT 300 IRQSARALLA IHDYFSRLRA LSSLWLARPK E* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 1e-141 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 1e-141 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142384.1 | 0.0 | PREDICTED: transcription factor TGA2-like isoform X1 | ||||
Refseq | XP_011655926.1 | 0.0 | PREDICTED: transcription factor TGA2-like isoform X1 | ||||
Refseq | XP_011655927.1 | 0.0 | PREDICTED: transcription factor TGA2-like isoform X1 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A0A0KV59 | 0.0 | A0A0A0KV59_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142384.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-153 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.307820.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|