PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.307210.5
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 158aa    MW: 17176.3 Da    PI: 8.2122
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.307210.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.52e-5824120197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl+kyre+eg
  Cucsa.307210.5  24 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEG 118
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Cucsa.307210.5 119 DT 120
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-5619135IPR009072Histone-fold
SuperFamilySSF471133.42E-4127139IPR009072Histone-fold
PfamPF008081.6E-283094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-217795No hitNo description
PRINTSPR006152.5E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MADAPASPGG GSHESGEQSP RSNVREQDRF LPIANISRIM KKALPANGKI AKDAKETVQE  60
CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKTYL TKYRETEGDT  120
KGSAKGGDGS AKKEAHPTPI PQVHYMNGSS RVVFPRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4723115193NF-YB
4awl_B2e-4723115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4723115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-4724115192Transcription factor HapC (Eurofung)
4g92_B1e-4724115192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG0038750.0HG003875.1 Cucumis sativus mRNA for nuclear transcription factor Y subunit B-8-like, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137802.11e-103PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_008442637.11e-103PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
SwissprotQ8VYK41e-76NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0A0LAB91e-102A0A0A0LAB9_CUCSA; Uncharacterized protein
TrEMBLA0A1S3B5N51e-102A0A1S3B5N5_CUCME; nuclear transcription factor Y subunit B-1 isoform X1
STRINGXP_008442637.11e-102(Cucumis melo)
STRINGXP_004137802.11e-102(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-69nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]