PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.304110.1 | ||||||||
Common Name | Csa_5G148680, LOC101207994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 28837.9 Da PI: 4.7349 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed llv++++q G g+W++ +++ g+ R++k+c++rw +yl Cucsa.304110.1 15 KGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.9e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l Cucsa.304110.1 68 RGNITADEDDLIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.972 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.06E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.457 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.72E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRTSSCCSK GGLHKGPWTA REDALLVNYI QQNGEGHWRA LPKKAGLLRC GKSCRLRWMN 60 YLRPDIKRGN ITADEDDLII KLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLAII 120 TKDNAGEAKK ESNGETSNTR KATEVWSFCN DDNLSNGVGS ELLLSSGNQG GEDGGSRGGG 180 ETDQLGVNGD EEIVEKVKGG REELEESGDF FGGCEGLYKG LSWNGSERID EIEDDSYQQL 240 LNLEGEDYIQ LESFIDYFLI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143947.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A0A0KNQ6 | 0.0 | A0A0A0KNQ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161467.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-63 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.304110.1 |
Entrez Gene | 101207994 |
Publications ? help Back to Top | |||
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