PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.302760.1 | ||||||||
Common Name | Csa_5G155560, LOC101204373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 26941.6 Da PI: 4.9284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.8e-16 | 86 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r ++ +g+Wv+eIr+p++ ++r++lg+f tae+Aa a++ a+++l+g Cucsa.302760.1 86 SLYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTAEMAATAYDVAALALRG 135 579***9.55.6*********843...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.27E-19 | 86 | 145 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.97E-30 | 86 | 145 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-27 | 87 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-30 | 87 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.547 | 87 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 87 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MADQKTLPIN EGQIDQSLDH KSSSPISKPI PIDPFVSSSV PTPQNPNSKS QEQLPPPPPP 60 PPPPPSSLPS SIISPPPPSS TNKKHSLYRG IRCRSGKWVS EIREPRKTTR IWLGTFPTAE 120 MAATAYDVAA LALRGGDAVL NFPASIPTYP VPASTSPVDI RTAASTAAIA AAAKAVKKVS 180 STSSVDVGTM EDCSKKMRIE EFVDEEEIFG MPGLLADMAE GMMVSPPRMN SPPLSDDLME 240 NSDGTESLWS YF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 84 | 143 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143932.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9CAN9 | 7e-48 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A0A0KKC4 | 1e-180 | A0A0A0KKC4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166984.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.302760.1 |
Entrez Gene | 101204373 |
Publications ? help Back to Top | |||
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