PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.300720.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 216aa    MW: 24770.4 Da    PI: 10.5005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.300720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+  G g+W+++ar  g++Rt+k+c++rw++yl
   Cucsa.300720.1  9 KGPWTAEEDSALYTYVTVNGEGHWNSVARSTGLKRTGKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding475.8e-1562105146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   Cucsa.300720.1  62 RGNITLQEQLLILQLHSRWGNR-WSKIAEFLP-GRTDNEIKNYWRT 105
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.323460IPR017930Myb domain
SuperFamilySSF466891.24E-307103IPR009057Homeodomain-like
SMARTSM007179.3E-14858IPR001005SANT/Myb domain
PfamPF002498.5E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-211063IPR009057Homeodomain-like
CDDcd001675.47E-91156No hitNo description
SMARTSM007171.7E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129418.20761111IPR017930Myb domain
PfamPF002496.8E-1462105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2164110IPR009057Homeodomain-like
CDDcd001673.78E-682105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSDDDVKKG PWTAEEDSAL YTYVTVNGEG HWNSVARSTG LKRTGKSCRL RWLNYLRPNL  60
RRGNITLQEQ LLILQLHSRW GNRWSKIAEF LPGRTDNEIK NYWRTRVQKQ AKQLNCDVNS  120
QRFRDAMRLV WIPRLVERIE AATSAQSPPL QPPPPPSLLL PPCIATDTST STWEQKIKPK  180
EKLIVTKLEN STMQWSPKGE GTKLLFFFLS SFFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24611124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818276e-99LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132586e-99LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651532.11e-127PREDICTED: transcription factor MYB108-like
SwissprotQ10MB41e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0A0L8621e-126A0A0A0L862_CUCSA; Uncharacterized protein
STRINGXP_004150903.11e-125(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.13e-71myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]