PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.292610.1 | ||||||||
Common Name | Csa_1G109320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 36229.3 Da PI: 8.2043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d + + G+g +W + +++ g++R++k+c++rw++yl Cucsa.292610.1 14 KGPWSPEEDAKLKDFIDKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.1e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ ++ G++ W+ Ia ++ gRt++++k++w++ Cucsa.292610.1 69 GGFTDEEDRIICTLFSTIGSR-WSIIATQLP-GRTDNDIKNHWNS 111 569******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.68 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.498 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.11E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRSPCCDKS NVKKGPWSPE EDAKLKDFID KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTDEEDRIIC TLFSTIGSRW SIIATQLPGR TDNDIKNHWN SKLKRKLIEM 120 EKKAQITTSR TIPSSHNHHH HQIFSSFSSQ PLSSLINKHD DYFNDINYSN YNLSSPPTTI 180 KSFESLISSI PSNWSNNNNN ISPSPCLVQT QETTNLLSSN SLMYNHHNPL VQMKESCLLG 240 FGSEGSCSSS TSDGRSYTQI NTTSGIMGFQ NNNNNNNPNY YYYYSDNIMN YINHQPAANL 300 EYSYMEDENK TLLENFMY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 0.0 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022964958.1 | 1e-109 | transcription factor MYB87-like | ||||
TrEMBL | A0A0A0LUZ6 | 0.0 | A0A0A0LUZ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147315.1 | 1e-166 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24502 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-75 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.292610.1 |
Publications ? help Back to Top | |||
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