PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.288940.1
Common NameCsa_1G574830, LOC101219457
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 403aa    MW: 45144.1 Da    PI: 4.8783
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.288940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.24.4e-37107205197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     klfqrlw++eDei lLqG++d+++++g+ + ++ d+  fy+++k++++++++k+qlveK+rrLKkK+++   k++sgk+++f+++hdq +fe+s+
  Cucsa.288940.1 107 KLFQRLWTDEDEIELLQGFLDYTMQRGTtHHHQnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISR 201
                     579*************************633446************************************************************* PP

          DUF573  94 kiWg 97 
                     kiW 
  Cucsa.288940.1 202 KIWS 205
                     ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-35109205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDPRNDAVFP DEDLEDDEES LDDDDDDEEE EELNDEPSPS TSSAGPLPVT SVSATVTIAT  60
PPAVSVVPPP SIVSISSADL IRQRLETATA EPLTLPGEKK PLDESRKLFQ RLWTDEDEIE  120
LLQGFLDYTM QRGTTHHHQN DTALFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVIGKI  180
SSGKDFNFKS PHDQATFEIS RKIWSNTGRI GVDDNALDDD EPAPTPYATY MDHRNEEMMA  240
NCAEKKPTPT PKSRKRSRPG SGIRMEAPRS SHENLNKEKN SIYHHHHNHN NNNNANNNEN  300
VNNVAVSGLI EETVKSCLSP LFKELLNTSM GGGLCGGRAF SGLALHPIPL SFSGASLNFS  360
GGLEMGDERW RKQQILELEV YSKRLELVQE QIKTALEDLR KV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135666.20.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0A0M1Q30.0A0A0A0M1Q3_CUCSA; Uncharacterized protein
STRINGXP_004166334.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.17e-79DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]