PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.287200.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 313aa    MW: 34304.4 Da    PI: 8.5737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.287200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-11145171127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     y+  +Cr++  +GtC++G++C+FaHg+
  Cucsa.287200.1 145 YRSDICRYWEDSGTCRFGNKCQFAHGK 171
                     67789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-14143176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9144176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521144172IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7144171IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-9145171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEDRQGKRSS KTSIIKGLNA SIRPMNIQMD NHLVIGGTRH YHQETNCKSP TIVDCYNIMN  60
HYASSTSGSN SFGSRGAGLS LSPLSAIENL ETPPIRSPQI YGTPMKVDEE VIVMDGILIS  120
SIHGEAKTVR SPLDSGSGGG GKNQYRSDIC RYWEDSGTCR FGNKCQFAHG KEDLRPGRLP  180
VRTKTKFSET YGSKFRNNHS LTGIAATTTT QSNSNLVDTI TKTELSKRGL TPTSSTLKGH  240
TNNNPTLIST ISIINWSPED DGIKIAVPGT ESTKREDVNQ HIHEVLYGST TERTKKRLPV  300
FVQICSEELQ EE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817970.0LN681797.1 Cucumis melo genomic scaffold, anchoredscaffold00072.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148935.10.0PREDICTED: uncharacterized protein LOC101215865
RefseqXP_011658933.10.0PREDICTED: uncharacterized protein LOC101215865
TrEMBLA0A0A0K5290.0A0A0A0K529_CUCSA; Uncharacterized protein
STRINGXP_004162743.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-08C3H family protein