PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285390.1
Common NameCsa_5G604260, LOC101204430
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28879.2 Da    PI: 4.9232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-184092456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++ +q++ Le+ F+ ++++ +e++ ++A+++gL  rqV vWFqNrRa+ k
  Cucsa.285390.1 40 KRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK 92
                    568999*********************************************98 PP
2HD-ZIP_I/II117.95.8e-3839130293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls +qv+lLE++F+ e+kLe+erKv++a+e+gl+prqvavWFqnrRAR k+k++E+dye L ++yd+lk++ ++L + ++eL++e+++
  Cucsa.285390.1  39 KKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNMNHELKAEVDQ 130
                     9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.4E-153798IPR001356Homeobox domain
PROSITE profilePS5007116.1153994IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-173992IPR009057Homeodomain-like
SuperFamilySSF466891.37E-1639104IPR009057Homeodomain-like
CDDcd000861.64E-143992No hitNo description
PfamPF000462.4E-154092IPR001356Homeobox domain
PRINTSPR000313.2E-56574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000313.2E-57490IPR000047Helix-turn-helix motif
PfamPF021832.8E-1294132IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.142.108.7E-4100216IPR004102Poly(ADP-ribose) polymerase, regulatory domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006471Biological Processprotein ADP-ribosylation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDSETTHFLS KPEASSLPCF WVSDSCSSMK GEGTTLGGKK RRLSVDQVRL LEKNFNDENK  60
LEHERKVQIA EEIGLRPRQV AVWFQNRRAR SKMKRIESDY ECLSAEYDKL KSDFDSLLNM  120
NHELKAEVDQ LRTTWAAVEK MKNHFEPVGV EAMDSSVTKL EKANAKTMGE ILYKVQMGSS  180
RHEEGSLSSS KSDGFYSESP TRDNQSKSAN FLQDEEDELG CLGKLEDELS ANELMNSFNI  240
LSSAVENQSF CFWS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135200.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A0A0KVU60.0A0A0A0KVU6_CUCSA; Homeobox protein
STRINGXP_004155327.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2461633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.17e-34homeobox protein 6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]