PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.285090.1 | ||||||||
Common Name | Csa_5G605080, LOC101205317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 216aa MW: 24260.5 Da PI: 9.8353 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.8 | 1.3e-33 | 3 | 58 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + YkeClkNhAa++Ggha+DGCgEfmps +++ +++++l+CaACgCHRnFHRre++ Cucsa.285090.1 3 ISYKECLKNHAAAVGGHALDGCGEFMPSITSTpTDPTSLNCAACGCHRNFHRRESD 58 68**************************99999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-28 | 3 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-17 | 3 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.0E-31 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.12 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-26 | 117 | 187 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-17 | 117 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.2E-24 | 128 | 185 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MLISYKECLK NHAAAVGGHA LDGCGEFMPS ITSTPTDPTS LNCAACGCHR NFHRRESDDP 60 WPNRRYYPYR LCAPPSPRLS RIKSQSPSSP IPLPISHIPP PVQFSGAHML MALSSGAGEE 120 DELRRKERKR KRTKFSGEQK EKMQLFSEKM GWRIGKSEER LVEEFCREIG IGKRVLRVWM 180 HNNKYMGGKT EKNRASQTHS SEENGGNGNE SKQST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-18 | 129 | 187 | 18 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135457.1 | 1e-161 | PREDICTED: zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9SEZ1 | 6e-57 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A0A0KSP2 | 1e-159 | A0A0A0KSP2_CUCSA; ZF-HD homeobox domain-containing protein | ||||
STRING | XP_004135457.1 | 1e-160 | (Cucumis sativus) | ||||
STRING | XP_004155389.1 | 1e-160 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 5e-45 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.285090.1 |
Entrez Gene | 101205317 |
Publications ? help Back to Top | |||
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