PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.284990.1

Common Name

Csa_5G605720, LOC105435572

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 433aa MW: 47285.6 Da PI: 8.5292

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.284990.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Cucsa.284990.1 105 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 165 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	103	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-32	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAEVDIRDPI IKLFGKTISL PLNHLDLPSD SKFPSSETTE KETSCEELGL EKRGNSSGNQ 60 ITDQTTSGVS ENPLEEREIS SPKASKNEEQ SETSNSPDNK TSKKPDKILP CPRCNSMDTK 120 FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKNSSSSHFR QLIIPDGGNH 180 RHQFLDNNGT FLTFASDSSI SNSQSCNPNG FLVNTENGDD HSSKSSITAS NSSEKGAKMA 240 SQQSIAKNVF PFLPQLQSFT GLSLPYSSIP PPSAPFYPPG IPVSYYPSQP YWGYLAPPSL 300 TLINPNGQNS STNSCVLGKR LRDGKLVKSP SNTESEIGKQ RNYEELCLGI PRTMKVDDPN 360 EAAKSCIWST LGIKNDKKAG GGSTSTTING GSLFVSLQQS TKGKEETQIE SWSLLQANPA 420 AFSRALKFRE IV*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAEVDIRDPI IKLFGKTISL PLNHLDLPSD SKFPSSETTE KETSCEELGL EKRGNSSGNQ  60
ITDQTTSGVS ENPLEEREIS SPKASKNEEQ SETSNSPDNK TSKKPDKILP CPRCNSMDTK  120
FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKNSSSSHFR QLIIPDGGNH  180
RHQFLDNNGT FLTFASDSSI SNSQSCNPNG FLVNTENGDD HSSKSSITAS NSSEKGAKMA  240
SQQSIAKNVF PFLPQLQSFT GLSLPYSSIP PPSAPFYPPG IPVSYYPSQP YWGYLAPPSL  300
TLINPNGQNS STNSCVLGKR LRDGKLVKSP SNTESEIGKQ RNYEELCLGI PRTMKVDDPN  360
EAAKSCIWST LGIKNDKKAG GGSTSTTING GSLFVSLQQS TKGKEETQIE SWSLLQANPA  420
AFSRALKFRE IV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655685.1	0.0	PREDICTED: cyclic dof factor 1
TrEMBL	A0A0A0KSR0	0.0	A0A0A0KSR0_CUCSA; Uncharacterized protein
STRING	XP_008446369.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24617	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	1e-56	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.284990.1
Entrez Gene	105435572

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]