PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.284960.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 298aa MW: 33840 Da PI: 6.7891

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.284960.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.7	5.6e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t+skR+ngi+KKA+ELS+LCd+++ +++fs+tgk Cucsa.284960.1 9 KRLENTNGRQSTYSKRKNGIMKKAKELSILCDVDIILLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.558	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-25	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.95E-28	2	83	No hit	No description
PRINTS	PR00404	7.9E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.9E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.9E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQST YSKRKNGIMK KAKELSILCD VDIILLMFSP TGKPNLSCEK 60 RSFEEVIARF AQQTPQERTK RKMESIDSLR KTFKKLDHDV NIDDLLGTSC WRNPDKINNV 120 DHLSQMEDSM RETLNQVRLH KDGMHLTFDM SVEQQIQQLQ HFSWIPNDSQ NIVLHDDPNF 180 VLHRDAECSA SSSFTSYPGY FGTGRSPEIS NSGQENGVLP ELSRTEALRP QLGGQNSYMS 240 YNVNFFNDPT FQPAAEMNLP INPVDYHVNG NLDTTQHNWA SSSGPCAVSL LDDRLFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-167	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-167	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135451.1	0.0	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Swissprot	Q1PFA4	3e-88	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A1S4DW30	0.0	A0A1S4DW30_CUCME; agamous-like MADS-box protein AGL30 isoform X2
STRING	XP_004135451.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-90	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Cucsa.284960.1

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]