PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.284270.1

Common Name

Csa_5G607470, LOC101209589

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 562aa MW: 60399.5 Da PI: 6.5102

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.284270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	378	426	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq Cucsa.284270.1 378 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 426 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.07E-16	373	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.74E-11	373	430	No hit	No description
PROSITE profile	PS50888	15.459	375	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	376	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	378	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	381	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDIGDRDKFR LESSIEDTIN CSNSMSSDWQ FGETTLTTMP TGLVLPGNVD VVRNQDMVGC 60 SSSTASMVES FSSTIWEQSA HCQNLGISNI QGHNISNTSN IIGISKASGC PVSSSSDIDR 120 TLDISWNLSH NMLKGGVYLP NFPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGGDVGH 180 FNVPDPVGVF SRGMGVIPER WDEIPRNGLG LASGTGGQSQ RNVVNSESSM PVCLTNEHGA 240 TERDSPKNGS PLKLDGRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSTKGLGT 300 RKRKRSGQKT ELDQANGPLQ QTTVSPKDDA ETQRKRDQNP NSTANKGTGK HGKQASQPSD 360 PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQE LVPGCSKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLATVN PRLDINIDGV VAKDILQSRV GPLSTLGFSS HMPVACPPPH 480 ISHHELIPTS FPAIGSSEML RSTMNSHMTP RSGGFKNPSQ IKNVWEGELQ NLVQMSFGMP 540 TPPNCLEVEG SDSSGRTKVE H*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDIGDRDKFR LESSIEDTIN CSNSMSSDWQ FGETTLTTMP TGLVLPGNVD VVRNQDMVGC  60
SSSTASMVES FSSTIWEQSA HCQNLGISNI QGHNISNTSN IIGISKASGC PVSSSSDIDR  120
TLDISWNLSH NMLKGGVYLP NFPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGGDVGH  180
FNVPDPVGVF SRGMGVIPER WDEIPRNGLG LASGTGGQSQ RNVVNSESSM PVCLTNEHGA  240
TERDSPKNGS PLKLDGRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSTKGLGT  300
RKRKRSGQKT ELDQANGPLQ QTTVSPKDDA ETQRKRDQNP NSTANKGTGK HGKQASQPSD  360
PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQE LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDINIDGV VAKDILQSRV GPLSTLGFSS HMPVACPPPH  480
ISHHELIPTS FPAIGSSEML RSTMNSHMTP RSGGFKNPSQ IKNVWEGELQ NLVQMSFGMP  540
TPPNCLEVEG SDSSGRTKVE H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655727.1	0.0	PREDICTED: transcription factor bHLH49 isoform X1
TrEMBL	A0A0A0KR06	0.0	A0A0A0KR06_CUCSA; Uncharacterized protein
STRING	XP_004135136.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7249	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-112	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.284270.1
Entrez Gene	101209589

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]