PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.283930.1 | ||||||||
Common Name | Csa_5G608320, LOC105435582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 324aa MW: 37067.2 Da PI: 9.8209 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.4 | 1.7e-40 | 86 | 208 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.eaesssssasnsssgkaaks 93 +kkdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL++++ aike + +++s+s+c ++ + + + k+ Cucsa.283930.1 86 KKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKEVKEKylsEAKSKSSCySSTDLVTNL--------YKE 172 79*************************************************************776555556663333333333........344 PP TCP 94 aakskksqksaasalnlakesrakarararertrekmr 131 +s k++++ + ++kesr karararertr k Cucsa.283930.1 173 VLPSGKKRRRRL--RIVDKESRYKARARARERTRAKSI 208 445555555555..88999***************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-35 | 86 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.41 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.075 | 189 | 206 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MSRLFEQQIH PPSLQLIDCS NYNYNNNYFN PFLDDHQEFI LGHILYSQKH QLLANNSDQI 60 GVIETKTDHS SQKIPISRKR SSSVMKKKDR HSKICTSKGP RDRRMRLSLE IARNFFDLQD 120 MLGFDKASKT VEWLFTKSRS AIKEVKEKYL SEAKSKSSCY SSTDLVTNLY KEVLPSGKKR 180 RRRLRIVDKE SRYKARARAR ERTRAKSIQR GLEVSKSNLE GNPDGVRKMG DFSEEISGNK 240 RKTSTHVSLC ENEKVLGSEE KNSDSLIMDK RVSKEICSDE IHLLPDSSMD MPTLSLDTMK 300 ASSAGLKLLE LDEVDGVLIF YGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | KKRRRR |
2 | 178 | 183 | KRRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655757.1 | 0.0 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A0A0KT45 | 0.0 | A0A0A0KT45_CUCSA; Uncharacterized protein | ||||
STRING | XP_008446552.1 | 1e-159 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 5e-28 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.283930.1 |
Entrez Gene | 105435582 |
Publications ? help Back to Top | |||
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