PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.283900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 591aa MW: 66506.7 Da PI: 5.4528 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.1 | 1.9e-32 | 253 | 392 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk....s 80 lp+G++F+P+d+e++++ L+k g + + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t+ + Cucsa.283900.1 253 LPRGVKFDPSDQEIIWHLLAKVGIGGSrphpfI---DefiptVFEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITDddfgD 343 699************888887744444476552...233333577778**********.677888899******************555466557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +W++tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l Cucsa.283900.1 344 VRWHKTGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 392 88************.99************6522666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-39 | 238 | 411 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.137 | 253 | 411 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-13 | 254 | 392 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MGVHVHVCAS LKLVLHNQVE NPIIDHTTSG ITDDYPSQRQ VIGVNTYDGV PLNPNPSHCK 60 SERDCQPFLI QTFSTNPNSE LPSSFLYKFQ FVVLGKVERQ TLSSFHHFCC CKTRPTVTGS 120 QNFPQNRNSV SSKSLTRYTI KVDEAAVILE ITFAIVDLDL PIRCLSWLGI LFLNFPFLAT 180 CSHVFCLVPN SHDMFFSKPS WLVDSNRIAT KIKSASGTNN PRSVEWKSNP SKSCPNCQHT 240 IDNSDVVQEW PGLPRGVKFD PSDQEIIWHL LAKVGIGGSR PHPFIDEFIP TVFEDDGICY 300 THPQKLPGVK QDGSVSHFFH RAIKAYNTGT RKRRKITDDD FGDVRWHKTG RTKPVVIDGV 360 QKGCKKIMVL YMSFAKGGRA EKTNWVMHQY HLGTEEDERD GEYVISKIFH QQQNVKQGEV 420 IEQEAPEIID TIKVDPHTPK SATPEPPRVE IRCVNIDPEQ DSPDGYSDEV IDDNDNHIEE 480 EPKWWEGESQ NILDSQQLVE ALSLCDDLLQ SQSPPRDGNF NHGASGSKSC FSEYAKLGPE 540 DLKKDLEECQ NLVLDPANIE LDTPPEFRLS QLDFGSQESF LAWGGKTDIE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT215862 | 0.0 | KT215862.1 Momordica charantia cultivar 24-K NAC domain-containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655759.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-179 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0A0KUF3 | 0.0 | A0A0A0KUF3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159303.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-172 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.283900.1 |