PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283870.1
Common NameCsa_5G608380, LOC101203784
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 333aa    MW: 37143.6 Da    PI: 9.4099
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-1354102155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Cucsa.283870.1  54 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 102
                     78****9888.8*********3.....5**********99*************98 PP
2B395.14.6e-30183284196
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsdv+k++rlv+pk++ae++      +  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F  +  ++
  Cucsa.283870.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQD 277
                     89*************************9998733334677899999999***************************************9544366 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     ++l++ +
  Cucsa.283870.1 278 KQLYIEW 284
                     6666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.16E-2654109No hitNo description
PfamPF008473.9E-954102IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1754110IPR016177DNA-binding domain
SMARTSM003805.3E-2955116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2055110IPR001471AP2/ERF domain
PROSITE profilePS5103220.48155110IPR001471AP2/ERF domain
PRINTSPR003679.9E-55667IPR001471AP2/ERF domain
PRINTSPR003679.9E-57692IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-40177295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-29181277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-27182270No hitNo description
PfamPF023629.9E-28183284IPR003340B3 DNA binding domain
SMARTSM010192.0E-22183288IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057183288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDGICIDETT STESKSPPPD TSLCRVGSGV TSVVLDSDSS GGGVEAESRK LPSSRYKGVV  60
PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF RGRDAVTNFK PLTHGGGEED  120
DIVSAFLNSH SKAEIVDMLR KHTYLDELHQ SKRNAGLSGS DRKQNRFLSG SDDDPETARE  180
LLFEKAVTPS DVGKLNRLVI PKQHAEKNFP LQTGSTASSK GLLLNFEDGG GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK NLKAGDIVSF LKSTGQDKQL YIEWKARKPS TTTGSAINPV  300
QTFRLFGVDI IKNEVERKER EKIINCKKER NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5718029611126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135113.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-134RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A0A0KR170.0A0A0A0KR17_CUCSA; DNA-binding protein RAV1
STRINGXP_004171558.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-129related to ABI3/VP1 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  7. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  8. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  9. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]