PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.283860.1

Common Name

Csa_5G608390, LOC101203539

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 357aa MW: 38864.4 Da PI: 7.9014

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.283860.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.6e-33	208	263	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cucsa.283860.1 208 KQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 263 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-29	205	266	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-18	205	265	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.189	205	265	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-27	208	263	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-7	210	261	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDFVHTFLDI RVGMDLSNYA DALDRERQKI QVFQRELPLC LELVTRAIDS CRQQLSGVST 60 ESSEHTSSDR PVLEEFIPIN KPCVNSHFEI EEDEQSKPGK IELGRSDWLK SAQLWNQSPD 120 PPLTEDVAKE VVEVKNNGGG GAFQPFEKTT PLKTESAVVV GRTAGSSFPE ATTISIPETT 180 TSSTAGTASK CGGGTAKRED KESQTQRKQR RCWSSELHRR FVHALQQLGG PHVATPKQIR 240 ELMKVDGLTN DEVKSHLQKY RLHSRRPTNT AMQDSGSSSA HQQFVVVGSI WVPPPPPPKY 300 TVATTEKGRN GIYAPVATLV GGKASQSSGG MVHSNSPATS SCTHTTTNSP NSRSAT*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDFVHTFLDI RVGMDLSNYA DALDRERQKI QVFQRELPLC LELVTRAIDS CRQQLSGVST  60
ESSEHTSSDR PVLEEFIPIN KPCVNSHFEI EEDEQSKPGK IELGRSDWLK SAQLWNQSPD  120
PPLTEDVAKE VVEVKNNGGG GAFQPFEKTT PLKTESAVVV GRTAGSSFPE ATTISIPETT  180
TSSTAGTASK CGGGTAKRED KESQTQRKQR RCWSSELHRR FVHALQQLGG PHVATPKQIR  240
ELMKVDGLTN DEVKSHLQKY RLHSRRPTNT AMQDSGSSSA HQQFVVVGSI WVPPPPPPKY  300
TVATTEKGRN GIYAPVATLV GGKASQSSGG MVHSNSPATS SCTHTTTNSP NSRSAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-106	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-106	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135112.1	0.0	PREDICTED: uncharacterized protein LOC101203539
Swissprot	Q9FPE8	2e-85	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A0A0KWD5	0.0	A0A0A0KWD5_CUCSA; Uncharacterized protein
STRING	XP_004135112.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	2e-79	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.283860.1
Entrez Gene	101203539

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]