PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283570.1
Common NameCsa_5G609670, LOC101212689
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 404aa    MW: 45466.1 Da    PI: 5.4335
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.3e-091760340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + +k+++++C  ++ +lC+ C  + H+       H++v
  Cucsa.283570.1 17 ARACDSCISKRARWYCAADDAFLCQACDASVHSAnslarrHERV 60
                    578*****************************657788888876 PP
2CCT67.24.4e-23347390144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Cucsa.283570.1 347 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 390
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.8E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9641562IPR000315B-box-type zinc finger
PfamPF006431.4E-71760IPR000315B-box-type zinc finger
CDDcd000213.07E-111862No hitNo description
PfamPF062039.0E-18347389IPR010402CCT domain
PROSITE profilePS5101715.993347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTTRKSVERT AEGGKTARAC DSCISKRARW YCAADDAFLC QACDASVHSA NSLARRHERV  60
RLQTASFRPS SDNSSAASWH QGFTKKPRSP RMGKTAPTRK PFPQVPEVSA KEESEEQEQL  120
LLHRVPVLGA DSKDGNLASF VGEKESSNGY LSYDMDPAEF AADVESLLGN SLDNECFDME  180
ELGLVASKDH SLTNDDYSLN SHEIIKIEPD EIEVLTPMLG IEADTMREPF ELNFMDFGSN  240
PTTCSEEDDK MMMEVMAVVK NGELEMEETK IVKNKKKVSL SLDSEAVIIA WGSRGTPWTS  300
GDRPNLDLDY YWPDYMGTYE SDCYYQPYGE FGSGIGRQAV TGVEGEREAR VSRYREKRRT  360
RLFAKKIRYE VRKLNAEKRP RMKGRFVKRS SCFAPPPLPL FNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357373RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135402.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A0A0KWF40.0A0A0A0KWF4_CUCSA; Uncharacterized protein
STRINGXP_004135402.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-83B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]