PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.283560.1

Common Name

Csa_5G609680

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 182aa MW: 19782.7 Da PI: 8.3568

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.283560.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.6	1.9e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C++dC+++p++ ++q++++ +++k++G++ + +l++a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+ Cucsa.283560.1 4 SCNGCRILRKGCSDDCIIRPCLqwipsSDSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQA 98 6*******************99954446789************************************************************ PP DUF260 91 kaelall 97 +++++l Cucsa.283560.1 99 AVDAVLN 105 9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.425	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSDDCI IRPCLQWIPS SDSQANATIF LAKFYGRAGL FNLITAAAQH 60 LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWERCQAAV DAVLNGSMNV EPDTPPSNNG 120 NLSLKCCDIR HVCNEPNLAA SGDLLKVKGR SRFKKPDHRT KPKPGPDHDL GIGSSFDEAG 180 RD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-172	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-172	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135401.1	1e-134	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9ZW96	1e-60	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A0A0KUI0	1e-131	A0A0A0KUI0_CUCSA; Uncharacterized protein
STRING	XP_004164162.1	1e-133	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	5e-63	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Cucsa.283560.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]