PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.282100.1 | ||||||||
Common Name | Csa_1G425940, LOC101203659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27336.1 Da PI: 4.7769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 49 | 92 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + Er+RR+++N++++ Lr+++P+ + K++Ka+i + A++YI++L Cucsa.282100.1 49 VASERNRRRKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIHDL 92 578*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-18 | 41 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.831 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-13 | 46 | 97 | No hit | No description |
Pfam | PF00010 | 2.2E-11 | 48 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-16 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDIIGDDYLN PFGNEIFIGE ELDSWGLEEP FSGDYDSSSP DGSAASKNVA SERNRRRKLN 60 ERLFALRSVV PNISKMDKAS IIKDAIDYIH DLHDQERRIQ AEIYELESGK LKKITGYEFD 120 QDQLPLLLRS KRKKTEQYFS YDSPVSRISP IEVLDLSVTY MGDRTIVVSM TCCKRADSMV 180 KLCEVFESLN LKIITANITA VSGRLLKTVF IEAEQEERDC LKIKIETAIA GLNDPHSPMS 240 I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-103 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-103 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146337.1 | 1e-178 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-80 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0A0LU95 | 1e-177 | A0A0A0LU95_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146337.1 | 1e-177 | (Cucumis sativus) | ||||
STRING | XP_004161793.1 | 1e-177 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.282100.1 |
Entrez Gene | 101203659 |
Publications ? help Back to Top | |||
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