PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.280310.1
Common NameCsa_5G569350, della1, LOC101204164
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 587aa    MW: 65048.6 Da    PI: 5.0525
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.280310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.94.2e-1382185771374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+ a+al++r+  la +++ +m+++a++f+eALa+r++r        l p++  ++++s++l++   f+e +P+lkf+h
  Cucsa.280310.1 218 LVHALMACAEAVQQNNLNIAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYR--------LCPENPLDHSVSDRLQM--HFYESCPYLKFAH 302
                     689****************************************************........43444444557777666..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++ G+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+
  Cucsa.280310.1 303 FTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVDFEYRGFVANSLADLD 397
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   E+++Vn+v++lh+ll+++++le+    vL++vk+++P++++vveqea+hn++ F++rf+e+l+yys+lfdsle +    +++++
  Cucsa.280310.1 398 ASMLELRPseVESVVVNSVFELHKLLARPGALEK----VLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGS---PNNQDK 485
                     ********88899*********************....**********************************************99...688999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +++++lg++i+nvvacega+r+erhetl +W+ rl++aGF+p++l+++a kqa++ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  Cucsa.280310.1 486 IMSEMYLGKQICNVVACEGADRVERHETLTQWQTRLSSAGFEPIHLGSNAFKQASMLLALFGsGEGYRVEENNGSLMLGWHTRPLIATSAWK 577
                     9999***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.8E-3646119No hitNo description
PfamPF120411.0E-3446113IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.591192556IPR005202Transcription factor GRAS
PfamPF035141.5E-135218577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MKREHHHLHP RPEPPSMAVV PNGESFLNTG KAKLWEEEAQ LDGGMDELLA VLGYKVKSSD  60
MADVAQKLEQ LEEAMCQVQD TGLSHLAFDT VHYNPSDLST WLESMLTELH PMPNFATPPP  120
PSQLDDPSFL APAESSTITS IDYDPQRQTS SRIFEESSSS DYDLKAITSS AIYSPRENKR  180
LKSSESDSDV FSTSAIRASD SVTRPVVLVD SQENGIQLVH ALMACAEAVQ QNNLNIAEAL  240
VKRIGYLAVS QAGAMRKVAT FFAEALARRI YRLCPENPLD HSVSDRLQMH FYESCPYLKF  300
AHFTANQAIL EAFEGKKRVH VIDFSMNRGM QWPALIQALA LRPNGPPAFR LTGIGPPAPD  360
NSDYLQEVGW KLAELAEAIH VDFEYRGFVA NSLADLDASM LELRPSEVES VVVNSVFELH  420
KLLARPGALE KVLSVVKQMK PEIMTVVEQE ANHNGPVFVD RFTESLHYYS TLFDSLEGSP  480
NNQDKIMSEM YLGKQICNVV ACEGADRVER HETLTQWQTR LSSAGFEPIH LGSNAFKQAS  540
MLLALFGSGE GYRVEENNGS LMLGWHTRPL IATSAWKIGN NPVVAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6421357614378Protein SCARECROW
5b3h_A8e-6421357613377Protein SCARECROW
5b3h_D8e-6421357613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7200860.0FR720086.1 Cucumis sativus partial della1 gene for gibberellin DELLA protein, clone CsDELLA1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150593.10.0PREDICTED: DELLA protein GAIP-B
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLK7ZTC90.0K7ZTC9_CUCSA; DELLA protein GAIP-B (Fragment)
STRINGXP_004150593.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]