PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.277570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23335 Da PI: 8.2002 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W+++++ g++R++k+c++rw++yl Cucsa.277570.1 5 AWTEEEDYLLKKCIEQYGEGKWHRVPQLAGLNRCRKSCRLRWLNYL 50 6*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3e-15 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E +l++++++ lG++ W+ Ia +++ gRt++++k++w+ + Cucsa.277570.1 56 RGSFTPQEVDLILNLHNILGNR-WSIIAGRLP-GRTANDIKNYWNCH 100 89********************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.426 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 5 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-28 | 5 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 23.851 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 58 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.74E-10 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGGIAWTEEE DYLLKKCIEQ YGEGKWHRVP QLAGLNRCRK SCRLRWLNYL RPNIKRGSFT 60 PQEVDLILNL HNILGNRWSI IAGRLPGRTA NDIKNYWNCH LSKKLNGQGV EKPNSTKEGS 120 NFGKQSKWKP LQEESSKSKG KEYVDDDQNN ESQGILVQNN QNQNTQPIVV EQNSSMSLGN 180 MQMDLFQFDQ QVLKAMEDED GCX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 6 | 106 | 10 | 109 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681846 | 1e-148 | LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009. | |||
GenBank | LN713259 | 1e-148 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138976.1 | 1e-148 | PREDICTED: transcription factor MYB1-like | ||||
TrEMBL | A0A1S3B4A4 | 1e-136 | A0A1S3B4A4_CUCME; transcription factor MYB90-like | ||||
STRING | XP_004138976.1 | 1e-148 | (Cucumis sativus) | ||||
STRING | XP_004155147.1 | 1e-148 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-55 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.277570.1 |