PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.277370.1

Common Name

Csa_5G265800, LOC101212711

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 722aa MW: 80472.9 Da PI: 5.3514

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.277370.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	120	142	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp Cucsa.277370.1 120 VPCIFFQK-GLCLKGDRCAFLHGP 142 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.652	28	57	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	1.7E-11	29	83	No hit	No description
SMART	SM00356	0.0018	29	56	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.46	59	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.21	61	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.065	116	143	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	116	142	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.18E-5	117	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-5	120	142	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.024	121	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MVGGGPQVLE QPPQSLPQST SAAEEEAIKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTAAIPS TPVNSSKQAV 120 PCIFFQKGLC LKGDRCAFLH GPPSVQTNKV PQMGANAQAG EPPSVKKVSG GTQRSSQEQK 180 IPQANFLKSI SGSSVKIATK DETVPSKIGK LNEKSIPPAE MADGGSRYKT TNALPTINEC 240 SLSRANRLQQ SHVIDDHGLQ NGKDADEFLK ESSPGFDVLV DDELRGSGYY GSEEQYGRSR 300 GHEGGNMTSM NDYDINHSAD YKMMGDVDHD VYNDVTDYDY ESRQGGQYGW DHRRTSSDKL 360 SLSSAQMERR IFPKSNSPEH VQNVDLRHRL NKQRRGNGLR SVINNENAAS RPEERNYRSS 420 RRDSHSSQES TVSNRLRGRI KLPRIPSPVR SSDIRPERDL NRGRPWGRSS PGRSQSLSNQ 480 GSNRDEIKGR LEEDYNNERR TFNGFNSRRE RTDGTSDFAA PKSLAELKGD KHIVSKEQQT 540 LGKRKGFDID QSGGELSFEG PKSLSEILKR KRQVKAAVDL PINNAERDNS ERSMERSTTH 600 QLKQSVLSST GKDETNSLDG VKSAPAETFV QEEENIDVPH RRSSQPMHSA DDHGIEAYDE 660 GLVEEDQEYE GDDQRDDGEY EYEQVDDGEY TYEEGDNIDP EEEYMDDEDG DDFAKKIGVM 720 S*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MVGGGPQVLE QPPQSLPQST SAAEEEAIKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTAAIPS TPVNSSKQAV  120
PCIFFQKGLC LKGDRCAFLH GPPSVQTNKV PQMGANAQAG EPPSVKKVSG GTQRSSQEQK  180
IPQANFLKSI SGSSVKIATK DETVPSKIGK LNEKSIPPAE MADGGSRYKT TNALPTINEC  240
SLSRANRLQQ SHVIDDHGLQ NGKDADEFLK ESSPGFDVLV DDELRGSGYY GSEEQYGRSR  300
GHEGGNMTSM NDYDINHSAD YKMMGDVDHD VYNDVTDYDY ESRQGGQYGW DHRRTSSDKL  360
SLSSAQMERR IFPKSNSPEH VQNVDLRHRL NKQRRGNGLR SVINNENAAS RPEERNYRSS  420
RRDSHSSQES TVSNRLRGRI KLPRIPSPVR SSDIRPERDL NRGRPWGRSS PGRSQSLSNQ  480
GSNRDEIKGR LEEDYNNERR TFNGFNSRRE RTDGTSDFAA PKSLAELKGD KHIVSKEQQT  540
LGKRKGFDID QSGGELSFEG PKSLSEILKR KRQVKAAVDL PINNAERDNS ERSMERSTTH  600
QLKQSVLSST GKDETNSLDG VKSAPAETFV QEEENIDVPH RRSSQPMHSA DDHGIEAYDE  660
GLVEEDQEYE GDDQRDDGEY EYEQVDDGEY TYEEGDNIDP EEEYMDDEDG DDFAKKIGVM  720
S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681904	0.0	LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140447.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A0A0KMA7	0.0	A0A0A0KMA7_CUCSA; Uncharacterized protein
STRING	XP_004140447.1	0.0	(Cucumis sativus)
STRING	XP_004157867.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37

Link Out ? help Back to Top
Phytozome	Cucsa.277370.1
Entrez Gene	101212711

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]