PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.275710.1
Common NameCsa_5G496470
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 132aa    MW: 14659.9 Da    PI: 9.3638
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.275710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-42151141100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C+lapyfp ++p kfa+vh+++Ga nv+k+l++lpe++r da+sslvyeA+ar+rdP+yG++g i++lq+++++l+a+la
  Cucsa.275710.1  15 PCAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQELPESQRADAASSLVYEANARIRDPIYGCTGSIFQLQNKVRELHAQLA 109
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  Cucsa.275710.1 110 VAKAE 114
                     99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.78414115IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4115112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQSSSPPPCT VVLSPCAACK ILRRRCVDKC ILAPYFPPTD PFKFAAVHRI YGAGNVIKFL  60
QELPESQRAD AASSLVYEAN ARIRDPIYGC TGSIFQLQNK VRELHAQLAV AKAEVHKMQQ  120
LQHPNLLALP RX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-391411510111LOB family transfactor Ramosa2.1
5ly0_B8e-391411510111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818913e-75LN681891.1 Cucumis melo genomic scaffold, anchoredscaffold00079.
GenBankLN7132633e-75LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023551518.15e-72LOB domain-containing protein 1-like
SwissprotQ9LQR03e-57LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK088e-57LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0A0KU204e-90A0A0A0KU20_CUCSA; Uncharacterized protein
STRINGXP_004173617.12e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-59LOB domain-containing protein 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]