PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.275510.2

Common Name

Csa_5G492330, LOC101219573

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 898aa MW: 98601 Da PI: 7.9429

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.275510.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	476	516	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ Cucsa.275510.2 476 YWTDGEKSLFIEAVSVYGKN-FSVISTHVG-SKSTDQCKVFFS 516 5***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.53E-14	250	310	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-4	258	308	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.336	262	313	IPR017884	SANT domain
SMART	SM00717	3.0E-5	263	311	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.41	472	523	IPR017884	SANT domain
SMART	SM00717	1.1E-6	473	521	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.21E-11	474	523	IPR009057	Homeodomain-like
Pfam	PF00249	7.2E-7	476	516	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-5	477	515	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-5	477	517	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MAHSTSDLEE VYADKDRSGR LDVKESVMKE KLTIYGCSVK ENIAAYIDNS VPIKSEGVTV 60 HPVANDMYEC AEGGDSVSDL ILASNKESAC KASEALIGML PTNERKIDIW STNACSQNQC 120 LVKERFAKRK RLLRFKERVI TLKFKAYQSL WKENLHVPPV RKLRAKSQKK HQLSLWTNYS 180 GYQKNRSSIR YRMPSPGNLN PVSSTEILKH VSMQLSTPQI KQYRRTLKMP ALVLDQKDKM 240 GSRFISNNGL VENPCAVEKE RAMINPWTSE EKDVFMEKLE CFGKDFGKIA SFLDHKTTAD 300 CVEFYYKNHK SDCFEKTKKL EFGKKVKSST SNYLMTTGKK WNPETNAASL DMLGAASTMT 360 ARAHKYSSSR SGGRTSYHIT QFDDGLSERA KGLNGFGNER EKVAADVLAG ICGSLSSEAM 420 GSCVTSNFNR GDSSQDLKCK KGVTTVLRQR MTTNVPRYVD NEIFSDESCG EMGPSYWTDG 480 EKSLFIEAVS VYGKNFSVIS THVGSKSTDQ CKVFFSKARK CLGLDLICSA KKMPDNGNGH 540 DADRSNGEGG VDTKDAFPCE MVGSRVVDDL PKAVMSISGG ESESMNLQST HQEVNPSSKT 600 CSNAAVDAMV SDDECTRKDG SQSGFDDDCQ SVNSANDKNG LIHEQQHVVI SDETAKEQDI 660 SVLVATSVGN VSDTETKRGN VDASTARGDK ADSHATDCPS IPSNSHITSS AKEEQGRHHV 720 RVHSRSLSDS EQSSRNGDIK LFGQILTHSS FVPSSKSGSS ENGIKTTEPH HKFKRRLKVN 780 SHGNLSTAKF NCKNSPGQEE NTPSRSYGIW DGNQIRTGLL SLPDPTTLLS RYPTFNHLSK 840 PASSPTEQSP SGCKEETSNS NKETQKREVN NSRKEEVVGE MNVEESCCNE GGGGGGS*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MAHSTSDLEE VYADKDRSGR LDVKESVMKE KLTIYGCSVK ENIAAYIDNS VPIKSEGVTV  60
HPVANDMYEC AEGGDSVSDL ILASNKESAC KASEALIGML PTNERKIDIW STNACSQNQC  120
LVKERFAKRK RLLRFKERVI TLKFKAYQSL WKENLHVPPV RKLRAKSQKK HQLSLWTNYS  180
GYQKNRSSIR YRMPSPGNLN PVSSTEILKH VSMQLSTPQI KQYRRTLKMP ALVLDQKDKM  240
GSRFISNNGL VENPCAVEKE RAMINPWTSE EKDVFMEKLE CFGKDFGKIA SFLDHKTTAD  300
CVEFYYKNHK SDCFEKTKKL EFGKKVKSST SNYLMTTGKK WNPETNAASL DMLGAASTMT  360
ARAHKYSSSR SGGRTSYHIT QFDDGLSERA KGLNGFGNER EKVAADVLAG ICGSLSSEAM  420
GSCVTSNFNR GDSSQDLKCK KGVTTVLRQR MTTNVPRYVD NEIFSDESCG EMGPSYWTDG  480
EKSLFIEAVS VYGKNFSVIS THVGSKSTDQ CKVFFSKARK CLGLDLICSA KKMPDNGNGH  540
DADRSNGEGG VDTKDAFPCE MVGSRVVDDL PKAVMSISGG ESESMNLQST HQEVNPSSKT  600
CSNAAVDAMV SDDECTRKDG SQSGFDDDCQ SVNSANDKNG LIHEQQHVVI SDETAKEQDI  660
SVLVATSVGN VSDTETKRGN VDASTARGDK ADSHATDCPS IPSNSHITSS AKEEQGRHHV  720
RVHSRSLSDS EQSSRNGDIK LFGQILTHSS FVPSSKSGSS ENGIKTTEPH HKFKRRLKVN  780
SHGNLSTAKF NCKNSPGQEE NTPSRSYGIW DGNQIRTGLL SLPDPTTLLS RYPTFNHLSK  840
PASSPTEQSP SGCKEETSNS NKETQKREVN NSRKEEVVGE MNVEESCCNE GGGGGGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	224	315	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	224	315	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655309.1	0.0	PREDICTED: uncharacterized protein LOC101219573 isoform X2
TrEMBL	A0A0A0KU04	0.0	A0A0A0KU04_CUCSA; Uncharacterized protein
STRING	XP_004143829.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-89	MYB family protein

Link Out ? help Back to Top
Phytozome	Cucsa.275510.2
Entrez Gene	101219573

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]