PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.275510.1

Common Name

Csa_5G492330, LOC101219573

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1384aa MW: 151911 Da PI: 7.979

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.275510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.1e-08	962	1002	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ Cucsa.275510.1 962 YWTDGEKSLFIEAVSVYGKN-FSVISTHVG-SKSTDQCKVFFS 1002 5***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-14	736	796	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.336	748	799	IPR017884	SANT domain
SMART	SM00717	3.0E-5	749	797	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-4	752	793	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.41	958	1009	IPR017884	SANT domain
SMART	SM00717	1.1E-6	959	1007	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.02E-11	960	1009	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	962	1002	IPR001005	SANT/Myb domain
CDD	cd00167	2.76E-5	963	1001	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-5	963	1003	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1384 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSEFLGPLPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSEEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY ARNGRESRSF SQRDWKGHSW 120 ATSNGSTNNG GRMQHDLNYD QRSVHDMLIY PSHSHSDFVN PREKVKGQHD KVDDVNGLGT 180 NQRRDREYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSKK SIDALDSNDR KSETVSKNAS 240 QNFSPSADHA ECAMSSLPYD DASARKKPRL GWGEGLAKYE KKKVEVPDGS TAFTNITAES 300 THSLNSSLIE KGPRGSGFAD CTSPATPSSV ISGSPPGGDE KSFGKASSDN DVSNFHGSPG 360 SCFQNQYEGT STVEKLDNFS IANLCSPLIQ LLQSNDSISV DSTALSKLLI YKNQISKVLE 420 TTESEIDLLE NELKGLKSES KGYFSFTLAS SSLLVGDKFF EEQNNVANAV ATLPVVTSAN 480 TISKTMAHST SDLEEVYADK DRSGRLDVKE SVMKEKLTIY GCSVKENIAA YIDNSVPIKS 540 EGVTVHPVAN DMYECAEGGD SVSDLILASN KESACKASEA LIGMLPTNER KIDIWSTNAC 600 SQNQCLVKER FAKRKRLLRF KERVITLKFK AYQSLWKENL HVPPVRKLRA KSQKKHQLSL 660 WTNYSGYQKN RSSIRYRMPS PAGNLNPVSS TEILKHVSMQ LSTPQIKQYR RTLKMPALVL 720 DQKDKMGSRF ISNNGLVENP CAVEKERAMI NPWTSEEKDV FMEKLECFGK DFGKIASFLD 780 HKTTADCVEF YYKNHKSDCF EKTKKLEFGK KVKSSTSNYL MTTGKKWNPE TNAASLDMLG 840 AASTMTARAH KYSSSRSGGR TSYHITQFDD GLSERAKGLN GFGNEREKVA ADVLAGICGS 900 LSSEAMGSCV TSNFNRGDSS QDLKCKKGVT TVLRQRMTTN VPRYVDNEIF SDESCGEMGP 960 SYWTDGEKSL FIEAVSVYGK NFSVISTHVG SKSTDQCKVF FSKARKCLGL DLICSAKKMP 1020 DNGNGHDADR SNGEGGVDTK DAFPCEMVGS RVVDDLPKAV MSISGGESES MNLQSTHQEV 1080 NPSSKTCSNA AVDAMVSDDE CTRKDGSQSG FDDDCQSVNS ANDKNGLIHE QQHVVISDET 1140 AKEQDISVLV ATSVGNVSDT ETKRGNVDAS TARGDKADSH ATDCPSIPSN SHITSSAKEE 1200 QGRHHVRVHS RSLSDSEQSS RNGDIKLFGQ ILTHSSFVPS SKSGSSENGI KTTEPHHKFK 1260 RRLKVNSHGN LSTAKFNCKN SPGQEENTPS RSYGIWDGNQ IRTGLLSLPD PTTLLSRYPT 1320 FNHLSKPASS PTEQSPSGCK EETSNSNKET QKREVNNSRK EEVVGEMNVE ESCCNEGGGG 1380 GGS*

Sequence ? help Back to Top

Protein Sequence Length: 1384 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSEFLGPLPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSEEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY ARNGRESRSF SQRDWKGHSW  120
ATSNGSTNNG GRMQHDLNYD QRSVHDMLIY PSHSHSDFVN PREKVKGQHD KVDDVNGLGT  180
NQRRDREYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSKK SIDALDSNDR KSETVSKNAS  240
QNFSPSADHA ECAMSSLPYD DASARKKPRL GWGEGLAKYE KKKVEVPDGS TAFTNITAES  300
THSLNSSLIE KGPRGSGFAD CTSPATPSSV ISGSPPGGDE KSFGKASSDN DVSNFHGSPG  360
SCFQNQYEGT STVEKLDNFS IANLCSPLIQ LLQSNDSISV DSTALSKLLI YKNQISKVLE  420
TTESEIDLLE NELKGLKSES KGYFSFTLAS SSLLVGDKFF EEQNNVANAV ATLPVVTSAN  480
TISKTMAHST SDLEEVYADK DRSGRLDVKE SVMKEKLTIY GCSVKENIAA YIDNSVPIKS  540
EGVTVHPVAN DMYECAEGGD SVSDLILASN KESACKASEA LIGMLPTNER KIDIWSTNAC  600
SQNQCLVKER FAKRKRLLRF KERVITLKFK AYQSLWKENL HVPPVRKLRA KSQKKHQLSL  660
WTNYSGYQKN RSSIRYRMPS PAGNLNPVSS TEILKHVSMQ LSTPQIKQYR RTLKMPALVL  720
DQKDKMGSRF ISNNGLVENP CAVEKERAMI NPWTSEEKDV FMEKLECFGK DFGKIASFLD  780
HKTTADCVEF YYKNHKSDCF EKTKKLEFGK KVKSSTSNYL MTTGKKWNPE TNAASLDMLG  840
AASTMTARAH KYSSSRSGGR TSYHITQFDD GLSERAKGLN GFGNEREKVA ADVLAGICGS  900
LSSEAMGSCV TSNFNRGDSS QDLKCKKGVT TVLRQRMTTN VPRYVDNEIF SDESCGEMGP  960
SYWTDGEKSL FIEAVSVYGK NFSVISTHVG SKSTDQCKVF FSKARKCLGL DLICSAKKMP  1020
DNGNGHDADR SNGEGGVDTK DAFPCEMVGS RVVDDLPKAV MSISGGESES MNLQSTHQEV  1080
NPSSKTCSNA AVDAMVSDDE CTRKDGSQSG FDDDCQSVNS ANDKNGLIHE QQHVVISDET  1140
AKEQDISVLV ATSVGNVSDT ETKRGNVDAS TARGDKADSH ATDCPSIPSN SHITSSAKEE  1200
QGRHHVRVHS RSLSDSEQSS RNGDIKLFGQ ILTHSSFVPS SKSGSSENGI KTTEPHHKFK  1260
RRLKVNSHGN LSTAKFNCKN SPGQEENTPS RSYGIWDGNQ IRTGLLSLPD PTTLLSRYPT  1320
FNHLSKPASS PTEQSPSGCK EETSNSNKET QKREVNNSRK EEVVGEMNVE ESCCNEGGGG  1380
GGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	710	801	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	710	801	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143829.1	0.0	PREDICTED: uncharacterized protein LOC101219573 isoform X1
TrEMBL	A0A0A0KU04	0.0	A0A0A0KU04_CUCSA; Uncharacterized protein
STRING	XP_004143829.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-126	MYB family protein

Link Out ? help Back to Top
Phytozome	Cucsa.275510.1
Entrez Gene	101219573

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]