PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.273670.1

Common Name

Csa_4G083490, LOC101210002

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BES1

Protein Properties

Length: 326aa MW: 34684.5 Da PI: 8.362

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.273670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	208.9	1.4e-64	2	145	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ++++r ptw+ErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g sa asp +s q Cucsa.273670.1 2 TSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYTSHQ 96 5899***************************************************************************************88 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 +sp++s ++sp sssfpsp+s++ i + +a +sl+p+l++ls++sss+ Cucsa.273670.1 97 --------PSPCASFNPSPGSSSFPSPASSSYIGNPNAdgSSLIPWLKNLSTSSSSA 145 ........*****************99998876677********9977764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.1E-65	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTSGTRLPTW RERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTY RKGCKPIERM DVVGGSAAAS PYTSHQPSPC ASFNPSPGSS SFPSPASSSY 120 IGNPNADGSS LIPWLKNLST SSSSASSSKL PNHYIHGGSI SAPVTPPLSS PTARTPRLKA 180 DWEDQSVLPG WSAQYYSSQP SSTPPSPGRQ IVPTPEWFAG LRIPQGGPNS PTFSLVSTNP 240 FGFKEAAITG GGSRMWTPGQ SGTCSPAIAA GSDHTADIPM SEVISDEFAF GSNAAGIVKP 300 WEGEIIHEEC GSDDLELTLG NSRTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137229.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	1e-137	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0A0KXL0	0.0	A0A0A0KXL0_CUCSA; Uncharacterized protein
STRING	XP_004137229.1	0.0	(Cucumis sativus)
STRING	XP_004156512.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2661	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-118	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Cucsa.273670.1
Entrez Gene	101210002

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]