PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.273460.1 | ||||||||
Common Name | Csa_4G088720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 400aa MW: 43173.1 Da PI: 6.8031 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.2e-36 | 37 | 153 | 2 | 113 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnsssg..... 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ ++ ++++++++++s + ++++ Cucsa.273460.1 37 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWHPstgNASTQGEEQQSLNDENENllsvq 131 79**************************************************************5555522233355555555554555565443 PP TCP 89 ...kaaksaakskksqksaasalnlake 113 +s +++s++s+l ++ + Cucsa.273460.1 132 rdvF------NSTGPNSSTSSFLPPSLD 153 3330......444444444444444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-31 | 37 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MGESHRQTST SSRLGMRTGG GGGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS 60 AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KAAIDELAEL PAWHPSTGNA STQGEEQQSL 120 NDENENLLSV QRDVFNSTGP NSSTSSFLPP SLDSDSIADT IKSFFPIGTS AAAAETTSSS 180 IQFQNYPQDL LSRTSSQNQD LRLSLQSFQD PIAIHRHHHA QHQSQGHQNE HVLFSGTAPL 240 SGFDVTTAGW SEHNSLNPAE ISRFPRITSW NASGAETGSG GGGGIRSAGY VFNSPHLPTA 300 LPPSQLMQPL FGENQFFSQR GPLQSSNTPS IRAWIDPSLT HTDHQQHQIP PSIHQSSYAG 360 LGFASGGFSG FHIPTRIQGE EEHDGISDKP SSASSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137216.2 | 0.0 | PREDICTED: transcription factor TCP4, partial | ||||
Swissprot | Q8LPR5 | 1e-106 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0A0KXN1 | 0.0 | A0A0A0KXN1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137216.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004172687.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-71 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.273460.1 |