PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.272470.1
Common NameCsa_4G664530, LOC105435330
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 352aa    MW: 38408.9 Da    PI: 4.3697
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.272470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16e-11181225448
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     +k+ rr  +NR AA rsR+RKk++++ Le k+k Le+e ++L   
  Cucsa.272470.1 181 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRL 225
                     6999**********************************9888654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-5175242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-12176240No hitNo description
PROSITE profilePS502179.76180237IPR004827Basic-leucine zipper domain
PfamPF001702.3E-9182233IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10182238No hitNo description
CDDcd147042.86E-16183234No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDEDLHFSDL IGQIDCNFFD EFPEVEFPVV QDSASPDSIS SWINHIENAL LNDDEDNAPS  60
LPTPPHDFCD SFLADLLVDS HEQPSVIDVD SNASDCGNDL TNSQKEDVHK VSPAAPTDDC  120
CGSFVADVLA DAHGRSSGVD AVVDVLSNAS NCGDDSNNSQ KEKVDAASID ESVGEDDDAV  180
SKKRRRQLRN RDAAVRSRER KKMYVKDLEM KSKFLEGECR RLGRLLQCYC AENQALRFSL  240
QMGGASGVSM TKQESAVLLL ESLLLGSLLW LMGTVCLFTL PPLPQSTLEP VPKVRMEKEG  300
PGSAPLNERE NNNSIYSYSS LQSRRCKAAR TRMKPSMLDA ILGASSALIS I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201KRRRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654291.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A0A0L5Z30.0A0A0A0L5Z3_CUCSA; Uncharacterized protein
STRINGXP_004157063.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.13e-17basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]