PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.272210.1
Common NameCsa_4G663700, LOC101204139
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 270aa    MW: 30643.2 Da    PI: 5.6198
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.272210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-2196156257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps++++++++ +l    +++e++V++WFqNrRa+ k+
  Cucsa.272210.1  96 RQRWTPTPVQLQILEQIFDEgNGTPSKQKIKDITLQLtqhgQISEANVYNWFQNRRARSKR 156
                     89*****************99**************************************97 PP
2Wus_type_Homeobox101.56.2e-3395158265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++it +L+++G+i+++NV++WFQNr+aR+++kq
     Cucsa.272210.1  95 ARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQ 158
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-1792161IPR009057Homeodomain-like
PROSITE profilePS5007114.49592157IPR001356Homeobox domain
SMARTSM003894.6E-1294161IPR001356Homeobox domain
SuperFamilySSF466892.01E-1795158IPR009057Homeodomain-like
CDDcd000862.74E-1396158No hitNo description
PfamPF000468.6E-1996156IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEWQNQQQQN QTEQLQMQVE QLSNADGVGG LYVKVMTDEQ MELLRQQISV YASICEQLVE  60
MHKAITAQQD LAGMRLGNLY CDPIMASAAG HKITARQRWT PTPVQLQILE QIFDEGNGTP  120
SKQKIKDITL QLTQHGQISE ANVYNWFQNR RARSKRKQAN SLPNNADSEP ETEVDSPKEK  180
KTKPEAFQTY EHLVPKSGNM YSQRTDLSTE ILSFDAQSNK GEPMFQSFGS GHTSQMTPIQ  240
NHRNNMSNDK MNVPDYSPYT PCEGYHLVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145546.10.0PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-77WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0A0L5X40.0A0A0A0L5X4_CUCSA; Uncharacterized protein
STRINGXP_004166813.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-72WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]