PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.272130.2 | ||||||||
Common Name | Csa_4G658610, LOC101217375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 934aa MW: 103584 Da PI: 6.5335 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 5.7e-29 | 623 | 672 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Cucsa.272130.2 623 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 672 89**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 611 | 692 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.7E-25 | 624 | 672 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51745 | 25.074 | 845 | 928 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.3E-24 | 845 | 928 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.22E-21 | 845 | 927 | No hit | No description |
PROSITE profile | PS50057 | 9.113 | 846 | 933 | IPR000299 | FERM domain |
Pfam | PF00564 | 4.2E-18 | 847 | 926 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.5E-23 | 847 | 924 | No hit | No description |
CDD | cd06407 | 8.92E-39 | 847 | 926 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005856 | Cellular Component | cytoskeleton | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 934 aa Download sequence Send to blast |
MDDGMLSPAT MLDAPAETAM DLDYMDGLFL DGCWLETADG TEFLHTSPSS FGVNLDALIG 60 WPATEMNGDF NMTQISRSNQ EEERKISTDE MSLGRKRIDM GQEGCSGQSE NNGFGGSELC 120 RRLWIGPGEH LGTPTSVMER LITAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLT KYRDVSVTYE FTADEDSKKA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV 300 MGHPNKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCMQQSRGG CRHSDENYSC 360 CVSTVDRACF VADQRIQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL 420 SHHAKLFGLH AAVAIRLRCI YISKTDFVLE FFLPVNCRNP EDQRVLLTSL STIIQRSCRS 480 LRLVTDRECS EENMQQSYRS LHLVTDVKLG EQSKFPFGEA GFVANGRSAM QEMSKVQNHQ 540 LETSHPTTSS VQNIQQHSGF VSFFQGGKPS EVLSSSGYQH RGFNYDLNGV VEDSEECATV 600 GNGSFPDVGL GKTGEKRRTK VDKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG 660 IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS GAFQIGSLYS NFQELASPNL SGSGSGPPFG 720 AKMGDCLKTS NEVGMSNLQG AASKSPSSSC SQSSSSSQCF SSRSNQNLPH WNEAGSEDQM 780 GGGVNPCDGE LKRVKSEVEI HVSIMEGSNV PRRSQSCKSL CKHPATECAM HTAKESNGMA 840 EAVEVQRVKV SFGEEKIRFR VHNRWGYEEL LNEIAKRFSI SDISKFDLKY LDDESEWVLI 900 TSDTDLQECF HVYKSSQVQT IKLSLQWLLM NLQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654268.1 | 0.0 | PREDICTED: protein NLP4 isoform X1 | ||||
TrEMBL | A0A0A0L5W8 | 0.0 | A0A0A0L5W8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145599.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.272130.2 |
Entrez Gene | 101217375 |
Publications ? help Back to Top | |||
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