PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.272130.2
Common NameCsa_4G658610, LOC101217375
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Nin-like
Protein Properties Length: 934aa    MW: 103584 Da    PI: 6.5335
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.272130.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.7e-29623672352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  Cucsa.272130.2 623 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 672
                     89**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.53611692IPR003035RWP-RK domain
PfamPF020422.7E-25624672IPR003035RWP-RK domain
PROSITE profilePS5174525.074845928IPR000270PB1 domain
SMARTSM006663.3E-24845928IPR000270PB1 domain
SuperFamilySSF542772.22E-21845927No hitNo description
PROSITE profilePS500579.113846933IPR000299FERM domain
PfamPF005644.2E-18847926IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.5E-23847924No hitNo description
CDDcd064078.92E-39847926No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005856Cellular Componentcytoskeleton
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MDDGMLSPAT MLDAPAETAM DLDYMDGLFL DGCWLETADG TEFLHTSPSS FGVNLDALIG  60
WPATEMNGDF NMTQISRSNQ EEERKISTDE MSLGRKRIDM GQEGCSGQSE NNGFGGSELC  120
RRLWIGPGEH LGTPTSVMER LITAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLT KYRDVSVTYE FTADEDSKKA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV  300
MGHPNKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCMQQSRGG CRHSDENYSC  360
CVSTVDRACF VADQRIQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL  420
SHHAKLFGLH AAVAIRLRCI YISKTDFVLE FFLPVNCRNP EDQRVLLTSL STIIQRSCRS  480
LRLVTDRECS EENMQQSYRS LHLVTDVKLG EQSKFPFGEA GFVANGRSAM QEMSKVQNHQ  540
LETSHPTTSS VQNIQQHSGF VSFFQGGKPS EVLSSSGYQH RGFNYDLNGV VEDSEECATV  600
GNGSFPDVGL GKTGEKRRTK VDKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG  660
IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS GAFQIGSLYS NFQELASPNL SGSGSGPPFG  720
AKMGDCLKTS NEVGMSNLQG AASKSPSSSC SQSSSSSQCF SSRSNQNLPH WNEAGSEDQM  780
GGGVNPCDGE LKRVKSEVEI HVSIMEGSNV PRRSQSCKSL CKHPATECAM HTAKESNGMA  840
EAVEVQRVKV SFGEEKIRFR VHNRWGYEEL LNEIAKRFSI SDISKFDLKY LDDESEWVLI  900
TSDTDLQECF HVYKSSQVQT IKLSLQWLLM NLQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654268.10.0PREDICTED: protein NLP4 isoform X1
TrEMBLA0A0A0L5W80.0A0A0A0L5W8_CUCSA; Uncharacterized protein
STRINGXP_004145599.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]