PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.272130.1

Common Name

Csa_4G658610, LOC101217375

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 943aa MW: 104532 Da PI: 6.7953

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.272130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.8e-29	623	672	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Cucsa.272130.1 623 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 672 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	611	692	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-25	624	672	IPR003035	RWP-RK domain
PROSITE profile	PS51745	26.62	845	928	IPR000270	PB1 domain
SMART	SM00666	3.2E-26	845	928	IPR000270	PB1 domain
SuperFamily	SSF54277	1.67E-21	845	928	No hit	No description
Pfam	PF00564	1.8E-18	847	927	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-23	847	924	No hit	No description
CDD	cd06407	9.18E-39	847	926	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005856	Cellular Component	cytoskeleton
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MDDGMLSPAT MLDAPAETAM DLDYMDGLFL DGCWLETADG TEFLHTSPSS FGVNLDALIG 60 WPATEMNGDF NMTQISRSNQ EEERKISTDE MSLGRKRIDM GQEGCSGQSE NNGFGGSELC 120 RRLWIGPGEH LGTPTSVMER LITAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLT KYRDVSVTYE FTADEDSKKA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV 300 MGHPNKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCMQQSRGG CRHSDENYSC 360 CVSTVDRACF VADQRIQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL 420 SHHAKLFGLH AAVAIRLRCI YISKTDFVLE FFLPVNCRNP EDQRVLLTSL STIIQRSCRS 480 LRLVTDRECS EENMQQSYRS LHLVTDVKLG EQSKFPFGEA GFVANGRSAM QEMSKVQNHQ 540 LETSHPTTSS VQNIQQHSGF VSFFQGGKPS EVLSSSGYQH RGFNYDLNGV VEDSEECATV 600 GNGSFPDVGL GKTGEKRRTK VDKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG 660 IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS GAFQIGSLYS NFQELASPNL SGSGSGPPFG 720 AKMGDCLKTS NEVGMSNLQG AASKSPSSSC SQSSSSSQCF SSRSNQNLPH WNEAGSEDQM 780 GGGVNPCDGE LKRVKSEVEI HVSIMEGSNV PRRSQSCKSL CKHPATECAM HTAKESNGMA 840 EAVEVQRVKV SFGEEKIRFR VHNRWGYEEL LNEIAKRFSI SDISKFDLKY LDDESEWVLI 900 TSDTDLQECF HVYKSSQVQT IKLSLQVSRR HKRNYLASSG FS*

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MDDGMLSPAT MLDAPAETAM DLDYMDGLFL DGCWLETADG TEFLHTSPSS FGVNLDALIG  60
WPATEMNGDF NMTQISRSNQ EEERKISTDE MSLGRKRIDM GQEGCSGQSE NNGFGGSELC  120
RRLWIGPGEH LGTPTSVMER LITAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLT KYRDVSVTYE FTADEDSKKA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV  300
MGHPNKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCMQQSRGG CRHSDENYSC  360
CVSTVDRACF VADQRIQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL  420
SHHAKLFGLH AAVAIRLRCI YISKTDFVLE FFLPVNCRNP EDQRVLLTSL STIIQRSCRS  480
LRLVTDRECS EENMQQSYRS LHLVTDVKLG EQSKFPFGEA GFVANGRSAM QEMSKVQNHQ  540
LETSHPTTSS VQNIQQHSGF VSFFQGGKPS EVLSSSGYQH RGFNYDLNGV VEDSEECATV  600
GNGSFPDVGL GKTGEKRRTK VDKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG  660
IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS GAFQIGSLYS NFQELASPNL SGSGSGPPFG  720
AKMGDCLKTS NEVGMSNLQG AASKSPSSSC SQSSSSSQCF SSRSNQNLPH WNEAGSEDQM  780
GGGVNPCDGE LKRVKSEVEI HVSIMEGSNV PRRSQSCKSL CKHPATECAM HTAKESNGMA  840
EAVEVQRVKV SFGEEKIRFR VHNRWGYEEL LNEIAKRFSI SDISKFDLKY LDDESEWVLI  900
TSDTDLQECF HVYKSSQVQT IKLSLQVSRR HKRNYLASSG FS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654268.1	0.0	PREDICTED: protein NLP4 isoform X1
TrEMBL	A0A0A0L5W8	0.0	A0A0A0L5W8_CUCSA; Uncharacterized protein
STRING	XP_004145599.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.272130.1
Entrez Gene	101217375

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]