PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.271180.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 208aa    MW: 23050.1 Da    PI: 4.4058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.271180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184089255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Cucsa.271180.1 40 KYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDKPEKAARAFDAAQFCLRG 89
                    8*****998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.34E-283999No hitNo description
PROSITE profilePS5103221.6014097IPR001471AP2/ERF domain
SMARTSM003801.3E-3140103IPR001471AP2/ERF domain
PfamPF008474.8E-124089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-294099IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-204099IPR016177DNA-binding domain
PRINTSPR003671.5E-84152IPR001471AP2/ERF domain
PRINTSPR003671.5E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
FSKPETPLSL GSDTSFSFPL IMADRLNSST TEPNDTSSAK YKGVRRRKWG KWVSEIRLPN  60
SRDRIWLGSY DKPEKAARAF DAAQFCLRGP QAKFNFPDSP PEIDGGDRLS AQEIQAAAAK  120
YAEEHGEEGV GNHDEGVTVE GGGVWPDNWD MTMDGGWEFG FGGNAMIYGG DISFGVQDEN  180
MEKEDFDNNG GNHFCHEPNF LWNFDNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1440971472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141440.11e-137PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLA0A0A0L4621e-136A0A0A0L462_CUCSA; Uncharacterized protein
STRINGXP_004157410.11e-137(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-39ERF family protein