PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.263980.1
Common NameCsa_4G507380, LOC101216254
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 306aa    MW: 31700.9 Da    PI: 9.5442
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.263980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  Cucsa.263980.1 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                    7789******************** PP
2zf-CCCH27.45.6e-09102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  Cucsa.263980.1 102 KTRMCNKYNTAEGCKFGDKCNFAHGE 127
                     89**********************96 PP
3zf-CCCH38.12.5e-12272296126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++fa+ G C +G+rC+FaHg
  Cucsa.263980.1 272 YKTKLCDNFAK-GSCTFGERCHFAHG 296
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-63359IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-899131IPR000571Zinc finger, CCCH-type
SMARTSM003560.041100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619100128IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-16167248IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.2E-17177246IPR004088K Homology domain, type 1
SMARTSM003227.3E-13177247IPR004087K Homology domain
PROSITE profilePS5008414.739178242IPR004088K Homology domain, type 1
CDDcd001052.19E-15180242No hitNo description
PfamPF000136.0E-12180244IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.0E-16267302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9270301IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558271298IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9272296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDMRKRGRPE AAFNSNGSFK KHKQELESLS TVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNVVAQM MNLAPVGAQP SRNIAAPPSV TNGGPSAPSQ VKTRMCNKYN TAEGCKFGDK  120
CNFAHGEWEL GRPNPPSHDN PRAMGGGGGG GGGVHMVGRM GGRMDLPPPG PAASFGASAT  180
AKISIDASLA GAIIGKGGIN SKQICRQTGA KLSIRDHESD PNLRNIELEG TFEQINEASA  240
MVRELIITVS MAGPGKASGG MGGGPAPTGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL  300
RKSGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146386.10.0PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0A0KZ790.0A0A0A0KZ79_CUCSA; Uncharacterized protein
STRINGXP_004146386.10.0(Cucumis sativus)
STRINGXP_004156007.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-53C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]