PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.261750.1
Common NameCsa_5G065660, LOC101222713
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 118aa    MW: 13583.1 Da    PI: 6.5406
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.261750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1866117253
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     rk+ ++tkeq + Le+ F++n++++ +++e LA+ l+L+ rq+ vWFqNrRa
  Cucsa.261750.1  66 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRA 117
                     78889**********************************************8 PP

2HD-ZIP_I/II74.71.7e-2466117152
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 
                     +kk+rl+keq++lLE+sF+++++L+p++K++la+ L+l+prq++vWFqnrRA
  Cucsa.261750.1  66 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRA 117
                     69*************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1847117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1750116IPR009057Homeodomain-like
PROSITE profilePS5007116.8662118IPR001356Homeobox domain
SMARTSM003891.6E-964118IPR001356Homeobox domain
CDDcd000866.13E-1665117No hitNo description
PfamPF000461.9E-1566117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAILPTSTSR LDLSISVPGF NSFSSALPPS VGRDLDMNKA PDEEEWMMGT MEEDEEINNN  60
GSNNPRKKLR LTKEQSHLLE QSFRQNHTLN PKQKETLAEV LKLKPRQIEV WFQNRRAX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819054e-83LN681905.1 Cucumis melo genomic scaffold, anchoredscaffold00033.
GenBankLN7132644e-83LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654500.14e-81PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1
SwissprotQ8S9N68e-38ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A0A0KJE29e-80A0A0A0KJE2_CUCSA; Uncharacterized protein
STRINGXP_004142329.11e-79(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-40homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]