PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259710.2
Common NameCsa_3G118080, LOC101222132
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 200aa    MW: 22072 Da    PI: 4.7569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259710.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19141194255
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+Lt rqV vWFqNrRa+e
  Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194
                     788899**********************************************97 PP

2HD-ZIP_I/II81.81e-26141194154
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR 
  Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194
                     69***************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-29196IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.0E-20124191IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19127194IPR009057Homeodomain-like
PROSITE profilePS5007117.265137197IPR001356Homeobox domain
SMARTSM003891.6E-12139198IPR001356Homeobox domain
PfamPF000461.5E-16141194IPR001356Homeobox domain
CDDcd000861.88E-16141194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGGRDDDVGL TLSLGFGVTT QSTHMQRPSS MHNHHLRKTH WNELFQFSDR NADSRSFLRG  60
IDVNRLPTGV DGEEENGVSS PNSTISSISG KRSEREAAGD EAEAEAEAEA EAEAEAEAER  120
ASCSRGSDDE DGGGGDGDAS RKKLRLSKEQ SMVLEETFKE HNTLNPKQKL ALAKQLNLTP  180
RQVEVWFQNR RAREMVEWD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-140LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-140LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133780.21e-140PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-59HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0A0L3P11e-138A0A0A0L3P1_CUCSA; Uncharacterized protein
STRINGXP_004155192.11e-139(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-26homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  6. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]