PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.259710.2 | ||||||||
Common Name | Csa_3G118080, LOC101222132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 22072 Da PI: 4.7569 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.6e-19 | 141 | 194 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ +++keq +Lee F+++++++ +++ LAk+l+Lt rqV vWFqNrRa+e Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194 788899**********************************************97 PP | |||||||
2 | HD-ZIP_I/II | 81.8 | 1e-26 | 141 | 194 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194 69***************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.2E-29 | 1 | 96 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 124 | 191 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-19 | 127 | 194 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 137 | 197 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-12 | 139 | 198 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-16 | 141 | 194 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-16 | 141 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGGRDDDVGL TLSLGFGVTT QSTHMQRPSS MHNHHLRKTH WNELFQFSDR NADSRSFLRG 60 IDVNRLPTGV DGEEENGVSS PNSTISSISG KRSEREAAGD EAEAEAEAEA EAEAEAEAER 120 ASCSRGSDDE DGGGGDGDAS RKKLRLSKEQ SMVLEETFKE HNTLNPKQKL ALAKQLNLTP 180 RQVEVWFQNR RAREMVEWD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-140 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-140 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004133780.2 | 1e-140 | PREDICTED: homeobox-leucine zipper protein HAT3-like | ||||
Swissprot | P46602 | 1e-59 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0A0L3P1 | 1e-138 | A0A0A0L3P1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155192.1 | 1e-139 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 8e-26 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.259710.2 |
Entrez Gene | 101222132 |
Publications ? help Back to Top | |||
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