PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259710.1
Common NameCsa_3G118080, LOC101222132
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32666.3 Da    PI: 6.3212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-19141195256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+Lt rqV vWFqNrRa+ k
  Cucsa.259710.1 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTK 195
                     788899***********************************************98 PP
2HD-ZIP_I/II127.46.1e-41141230191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Cucsa.259710.1 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 230
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.9E-29196IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.5E-20124191IPR009057Homeodomain-like
SuperFamilySSF466898.36E-20127198IPR009057Homeodomain-like
PROSITE profilePS5007117.734137197IPR001356Homeobox domain
SMARTSM003895.2E-17139201IPR001356Homeobox domain
PfamPF000461.9E-16141195IPR001356Homeobox domain
CDDcd000866.44E-16141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
SMARTSM003405.7E-27197240IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-11197231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGGRDDDVGL TLSLGFGVTT QSTHMQRPSS MHNHHLRKTH WNELFQFSDR NADSRSFLRG  60
IDVNRLPTGV DGEEENGVSS PNSTISSISG KRSEREAAGD EAEAEAEAEA EAEAEAEAER  120
ASCSRGSDDE DGGGGDGDAS RKKLRLSKEQ SMVLEETFKE HNTLNPKQKL ALAKQLNLTP  180
RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTEENRRL QKEVQELRAL KLSPQLYMHM  240
NPPTTLTMCP QCERVAVSSS SSTSAATTTR HQAAAGVQRP SMAINPWAVL PIQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145SRKKLRL
2189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-140LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-140LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133780.20.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-108HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0A0L3P10.0A0A0A0L3P1_CUCSA; Uncharacterized protein
STRINGXP_004155192.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-72homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  6. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]