PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258020.1
Common NameCsa_3G124760, LOC101214775
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 202aa    MW: 22040.3 Da    PI: 10.4048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-202979256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+ +l+ge
  Cucsa.258020.1 29 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAAIALRGE 79
                    589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-302985No hitNo description
PROSITE profilePS5103220.4952986IPR001471AP2/ERF domain
PfamPF008471.6E-152979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-282986IPR001471AP2/ERF domain
SMARTSM003805.9E-342991IPR001471AP2/ERF domain
PRINTSPR003671.6E-73041IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-203085IPR016177DNA-binding domain
PRINTSPR003671.6E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAGRETKRS ATVSRCISHS QPNKSPARRF VGVRQRPSGR WVAEIKDSSQ RVRLWLGTYD  60
TPEEAARAYD EAAIALRGEN ARTNFVSPAT GWSPDSKVSN IGVLKAKLSK NLQSIIARTS  120
EQSKSLKNRV SDRFTFGNIF NFRSYQSATM ADLTAIDKAA VQPSIIVPHV ETDRSGSWDS  180
SDGEGIRPLG FSSDGSEVAG DX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1429851471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134337.11e-144PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A0A0L8Z91e-143A0A0A0L8Z9_CUCSA; Uncharacterized protein
STRINGXP_004134337.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]