PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.256230.1
Common NameCsa_3G133130
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 165aa    MW: 18613.6 Da    PI: 10.5853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.256230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1994142153
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     s+y+GVr++k +grW+AeIrd + +   r+r++lg++ taeeA +a++  r+++
  Cucsa.256230.1  94 SRYRGVRQRK-WGRWAAEIRDpF-K---RARVWLGTYNTAEEASRAYESKRLEF 142
                     79*******9.**********55.3...5********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.7E-321156IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.18E-1794146IPR016177DNA-binding domain
PfamPF008475.6E-1394142IPR001471AP2/ERF domain
CDDcd000181.78E-2294148No hitNo description
SMARTSM003803.0E-1695149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2295147IPR001471AP2/ERF domain
PROSITE profilePS5103220.8595157IPR001471AP2/ERF domain
PRINTSPR003677.9E-1196107IPR001471AP2/ERF domain
PRINTSPR003677.9E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSRKIRVICN DPDGTDSSSS ENERDESNSS KSKRIVREIH FPLFASSNSS SDSSIHDEET  60
SHTSSHHTNN GGKPQQLTNI RVLTKTLTPE RTTSRYRGVR QRKWGRWAAE IRDPFKRARV  120
WLGTYNTAEE ASRAYESKRL EFQSAMAAAP KAPTRFKGSH LLGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1396136647ATERF1
3gcc_A6e-1396136647ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134382.11e-119PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0A0L8111e-118A0A0A0L811_CUCSA; Uncharacterized protein
STRINGXP_004157714.11e-119(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-22ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]