PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.254620.1 | ||||||||
Common Name | Csa_3G146290, LOC101218269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 364aa MW: 42588.4 Da PI: 5.5708 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1e-35 | 40 | 132 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+yei+ed +++++sws+ +nsfvv+d+++f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+k+ll+ Cucsa.254620.1 40 FLTKTYEIIEDIGTNHIVSWSRGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLKL 125 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + Cucsa.254620.1 126 IRRRKAS 132 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-38 | 33 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.7E-59 | 36 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.98E-34 | 36 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-30 | 40 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 40 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 79 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNRPGRRVKE EIPASSSSGT TTAASPQPME GLHEAGPPPF LTKTYEIIED IGTNHIVSWS 60 RGNNSFVVWD PQSFSLTLLP KYFKHSNFSS FVRQLNTYGF RKVDPDKWEF AHEGFLRGQK 120 HLLKLIRRRK ASQPNASHQA PDSCVEVGRF GLDGEVDRLQ RDKQVLMAEV VKLRQQQQNT 180 KTYLQTMERR LKKTETKQQL MMNFLARAIQ NPDFIQQLIH QKDKHKELEE TINRKRRRHI 240 DQGQPDFEDE EEKEDDYDHL PPFINDDIEM DVDLLPIGDE EHLMKYHVPK KEIMDENCER 300 NVDNIEDLNE GFWENLLNEA NEEDHYGFGT HGFKEQQDYK DEDHHGNNEL VDHFAFFTSN 360 NLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 35 | 132 | 12 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 237 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134433.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-118 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0A0L5E2 | 0.0 | A0A0A0L5E2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004169331.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-116 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.254620.1 |
Entrez Gene | 101218269 |
Publications ? help Back to Top | |||
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